Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30551g00006 ATGAGCAGTATCTGTTCCGATCATCAGCAGCACCATCACAAGTTCTACCCTTCTCAACAACTCCTCTCTCCTAAGAAATCCCTCAGAGACATTGATGTTCCACCAAGGAAGCTCCTCACCCGTCGTGCCTCCTCCGCCATTGAAGCCGGCGACATGTTCTCCGACGACACGCTTTTTCAGAAATTCCTCCCTTGCAACAACCCTGCTGACTCTGACTCCGGCTCCGACGGCGACGACCCTTACTCCTCCGACCATTTCCGGATGTACGAGTTCAAGGTCCGTCGCTGCACTCGCAGCCGGAGCCACGACTGGACTGACTGCCCTTTCGCCCACCCGGGCGAAAAGGCACGCCGTCGCGACCCACGTCGGTATCACTACTCCGGAACAGTCTGTCCGGAGTACCGACGCGGCGCGTGCAGCCGTGGCGACAGCTGCGAGTTCGCACACGGTGTGTTTGAATGCTGGCTCCACCCCGCAAGGTACAGAACCGAAGCATGCAAAGATGGGAAGAACTGCAAGAGGAAAGTGTGCTTTTTCGCGCACACTCCGAAACAACTGAGGATCCTTCCGGTTACAATGAGTTCTTCGAATGACTTGTCGCCATGCAAAAAGAACAAGCTTTTATTGAACCCTTCTTCAGGTTCTAGTAACAACAATAGCTGCTGTATGTTCTGCCACCACTGTACCGGTGGTGCTGCTGCCGCCGTTAATTCTCCAACTTCCACGCTTTTCGGCATGTCCCGTTTCTCGCCGCCGCTCTCACCATCCTCCTCCGCCACGTCGCCGCCGGTTTCTCCGGTTAGTAGGCTGTCCCGATACAGTGCGTGTCGTGGTGGCGGCGGTGGTGGTGGTGCCAGTAATGTGAGTTACAAGGACGTGGTTAATGAATTGATGAATTCTTTGGAGGGTTTGAGTCTTAGCGACGCTTTGAATTTTAGCGACGTTTCTGGTGTTTCTGCTGCTAAAGTTGCAACTAACATGCCGTGGGTTGATGTTCCTCTGAATTGTGAGGATCAGCAAGAGTTTCTTTTTTCTCCATCTTCTCCGATGATGGTGACGCCAACAAGAGGCTATGATGATGCTGATGGGAAATTTTCGAGGTTTTTTATTAGCAACGAAAACAACGTGGTTGCTAATAAATCAAATTCTAATGCTAATAATAATATTGCTAATGATATTATTAATGGGTCGAATAATAGTTGCCCTGCTCCTGATCTCGGGTGGGTGAATGATCTTCTGATGTAG 1245 0.5108 MSSICSDHQQHHHKFYPSQQLLSPKKSLRDIDVPPRKLLTRRASSAIEAGDMFSDDTLFQKFLPCNNPADSDSGSDGDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGACSRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPKQLRILPVTMSSSNDLSPCKKNKLLLNPSSGSSNNNSCCMFCHHCTGGAAAAVNSPTSTLFGMSRFSPPLSPSSSATSPPVSPVSRLSRYSACRGGGGGGGASNVSYKDVVNELMNSLEGLSLSDALNFSDVSGVSAAKVATNMPWVDVPLNCEDQQEFLFSPSSPMMVTPTRGYDDADGKFSRFFISNENNVVANKSNSNANNNIANDIINGSNNSCPAPDLGWVNDLLM 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30551g00006 414 Gene3D - 125 189 - -
Stsc30551g00006 414 SUPERFAMILY CCCH zinc finger 124 154 IPR036855 GO:0046872
Stsc30551g00006 414 SMART c3hfinal6 160 183 IPR000571 GO:0046872
Stsc30551g00006 414 SMART c3hfinal6 125 151 IPR000571 GO:0046872
Stsc30551g00006 414 ProSiteProfiles Zinc finger C3H1-type profile. 126 152 IPR000571 GO:0046872
Stsc30551g00006 414 PANTHER UNKEMPT FAMILY MEMBER 44 413 IPR045234 -
Stsc30551g00006 414 FunFam Zinc finger CCCH domain-containing protein 66 83 151 - -
Stsc30551g00006 414 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 150 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30551g00006 Stsc-Chr30551 38532 39776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30551g00006 78 187 C2H2 Transcription Factor Family AT5G07500 70.909 5.03e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc30551g00006 zf-CCCH 3.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30551g00006 K23047 - gmx:100801371 419.853