Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30551g00005 ATGAAGCGTTATGTTTATATAAATGATGACGAATCATCACATGATTTATACTGTGATAATCGTATATCAAACAGAAAGTATACTGTGCTGAACTTTATTCCAAAAAATTTATGGGAACAGTTCAGCCGGTTCATGAATCAGTACTTTTTGCTGATAGCTTGCCTACAGCTATGGTCTCTCATTACTCCAGTAAATCCTGCCAGTACTTGGGGTCCACTTATCTTCATTTTTGCAGTCTCTGCAACAAAAGAGGCATGGGATGATTACCATAGATACCTGTCAGACAAGAAGGCAAATGAGAAAGAAGTCTGGGTTGTCAAAAATGGCATCAAGAAACTTATCCAAGCCCAGGATATTCATGTAGGTAACATAGTATGGCTACGTGAAAATGATGAAGTGCCTTGTGACCTTGTTTTGATTGGCTCCTCTGATCCACAAGGACTTTGCTATATAGAGACTGCTGCGATGGATGGTGAAACTGATCTGAAGACAAGGGTCATACCTTCTGCCTGCATGGGAATTGATGTTGAGCTACTGCACAAAATTAAGGGTGTAATTGAGTGTCCCACTCCAGATAAAGACATCAGAAGATTTGATGCTAACATGCGGTTGTTCCCCCCATTTATTGATAATGATATATGCCCTTTAACCATTAAAAACACAGTTCTTCAATCATGTTACTTACGGAACACTGAGTGGGCATGTGGGGTAGCTGTGTACACAGGCAATGAAACCAAATTGGGCATGAGTAGAGGTATACCAGAACCAAAGCTCACTGCTATGGATGCCATGATAGACAAGTTGACTGGTGCTATATTTGTATTCCAAATTGTTGTTGTAATGGTTCTTGGCATTGCGGGTAATGTTTGGAAGGACACAGAAGCAAAGAAACAATGGTATGTTCTTTACCCTGATAAAGGTCCTTGGTATGAACTATTGATCATCCCTCTACGGTTCGAGCTTCTTTGTTCCATCATGATACCCATTTCAATTAAGGTATCTCTAGATCTAGTGAAGGGCTTGTATGCAAAGTTTATTGATTGGGACGATCAAATGGTTGACCTTGAGACTAGTACTCCATCCAATGCAACAAATACAGCGATAAGTGAGGACTTGGGACAAGTTGAGTACATTTTGACTGACAAGACAGGCACGTTGACTGAGAATAAGATGATATTTAGAAGATGTTGCATTAGCGGCATTTTCTATGGAAATGAGAATGGTGATGCATTGAAAGATGTAGAGCTTCTCCATGCTGTTTCCAGTGGTTCACCTGATGTTGTACAGTTTCTTACAATTATGGCAATATGCAATACTGTCATACCTACACAAAGCAAAACTGGAGATATATTGTATAAGGCACAATCTCAGGATGAGGATGCTCTTGTTCAAGCTGCTGCTCGACTGCATATGGTATTCTTCAATAAGAGTGGAAACATTCTCGAAGTCAAATTTAACAACTTAATACTTCAGTATGAAGTTCTGGAAACCTTAGAATTCACCTCAGACAGGAAAAGAATGTCATTAGTGTTGAAAGATTGTCAAAATGGAAAGATTCTTCTTTTGTCAAAAGGAGCAGATGAGGCTATTCTTCCTTATGCTCGTACCGGGCAGCAAACTCGGAATTTCGTTGAAGCTGTGGAACAATATGCTCACTTGGGACTACGCACACTATGTTTGGCTTGGCGTGAATTAAGAGAAGATGAATATAGAGAATGGTCTTTAATGTTTAAAGAGGCCAATAGCACTTTGGTTGATAGAGAGTGGAGAGTTGCTGAGGTCTGCCAAAGAATAGAACACAATTTGGAAGTCCTTGGTGTTACAGCCATAGAGGATCGTTTGCAGGATGGAGTTCCTGAAACAATAGAAACTCTAAGAAAAGCGGGAATAAATTTTTGGATGCTAACAGGAGACAAGCAGAATACTGCAATACAAATTGCGCTGTCATGTAATTTTATTTCCCCAGAACCGAAGGGCCAGCTTCTTTCAATTGATGGAAAAACGGAGGATGAGGTTCGTAGAAGTTTAGAGCGAGTGCTTCTTACAATGCGGATAACCACCTCAGAACCTAAGGATGTGGCTTTTGTTATTGATGGCTGGGCTCTTGATTTTGCACTTAATCACTACCGCAAAGCTTTCACTGAGCTGGCAATATTGTCAAGGACTGCCATATGTTGTCGCGTGACACCATCCCAAAAAGCTCAGCTTGTACAAATCTTAAAATCATGCGATTATAGAACTTTGGCAATTGGAGATGGTGGGAATGATGTAAGGATGATACAACAAGCTGATATTGGTGTGGGCATCAGTGGCAGAGAAGGATTGCAGGCAGCAAGAGCAGCTGATTACAGTATTGGAAAGTTCAGATTCCTGAAAAGATTAATTCTAGTACATGGCCGCTACTCTTACAACCGGACAGCATTTCTTTCTCAGTATTCATTCTACAAGTCCCTACTGATATGCTTTATCCAAATATTTTTTTCATTTATTTCAGGGGTCTCTGGAACCAGCCTCTTCAATTCTGTCAGCTTGATGGCTTATAATGTTTTCTACACTAGTGTTCCTGTTCTAGTCAGTGTGCTTGACAAAGATCTTAGTGAGGAAACTGTGATTCAGCATCCTCAAATTTTATTTTATTGCCAAGCTGGGAGACTTCTAAATCCCAGTACATTTGCTGGATGGTTTGGGCGATCTCTCTTCCATGCAATAGTTGTATTTCTTATAAGTATACATGCTTATGCCTATGATAAAAGTGAAATGGAGGAGGTTTCAATGGTTGCACTCTCCGGTTGTATTTGGTTGCAGGCTTTTGTAGTGGCGATGGAGACCAATTCATTTACAATATTGCAACATCTTGCTATATGGGGCAATTTAGCTGGGTTTTATGCCATCAACTGGATATTCAGTGCCCTTCCTGCATCGGGGATGTATACAATTATGTTTCGGTTGTGTCGACAACCGTCGTATTGGATATCAATTTTTCTTATGACTGCAGCAGGGATGACTCCAATCCTTGCTATCAAGTACTTCCGATTTACATATAGACCTAGCAAAATCAATACACTTCAGCAGGCTGAACGACTTGGCGGACCAATTGTGTCTCTCGGTACCATTGAGCCTCAGCCCCGACCACTTATAGAGAAAGATGTTTCTACCCTGTCAATAACACAACCCAAGATCAGAAATCCTGTGTATGAACCTCTGTTGTCAGATTCTCCAAATGCCACCAGAAGATCTGCAGGAACCCCATTTGATTTTTTTCAGTCGCAGTCAAGGTCATCACTGCCTAACTACTCTAGGAACTGCAAGGATAACTGA 3318 0.4063 MKRYVYINDDESSHDLYCDNRISNRKYTVLNFIPKNLWEQFSRFMNQYFLLIACLQLWSLITPVNPASTWGPLIFIFAVSATKEAWDDYHRYLSDKKANEKEVWVVKNGIKKLIQAQDIHVGNIVWLRENDEVPCDLVLIGSSDPQGLCYIETAAMDGETDLKTRVIPSACMGIDVELLHKIKGVIECPTPDKDIRRFDANMRLFPPFIDNDICPLTIKNTVLQSCYLRNTEWACGVAVYTGNETKLGMSRGIPEPKLTAMDAMIDKLTGAIFVFQIVVVMVLGIAGNVWKDTEAKKQWYVLYPDKGPWYELLIIPLRFELLCSIMIPISIKVSLDLVKGLYAKFIDWDDQMVDLETSTPSNATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCISGIFYGNENGDALKDVELLHAVSSGSPDVVQFLTIMAICNTVIPTQSKTGDILYKAQSQDEDALVQAAARLHMVFFNKSGNILEVKFNNLILQYEVLETLEFTSDRKRMSLVLKDCQNGKILLLSKGADEAILPYARTGQQTRNFVEAVEQYAHLGLRTLCLAWRELREDEYREWSLMFKEANSTLVDREWRVAEVCQRIEHNLEVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEDEVRRSLERVLLTMRITTSEPKDVAFVIDGWALDFALNHYRKAFTELAILSRTAICCRVTPSQKAQLVQILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQIFFSFISGVSGTSLFNSVSLMAYNVFYTSVPVLVSVLDKDLSEETVIQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAIVVFLISIHAYAYDKSEMEEVSMVALSGCIWLQAFVVAMETNSFTILQHLAIWGNLAGFYAINWIFSALPASGMYTIMFRLCRQPSYWISIFLMTAAGMTPILAIKYFRFTYRPSKINTLQQAERLGGPIVSLGTIEPQPRPLIEKDVSTLSITQPKIRNPVYEPLLSDSPNATRRSAGTPFDFFQSQSRSSLPNYSRNCKDN 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30551g00005 1105 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 4 1026 - -
Stsc30551g00005 1105 SFLD p-type atpase 364 801 IPR044492 -
Stsc30551g00005 1105 Pfam Cation transport ATPase (P-type) 436 533 - -
Stsc30551g00005 1105 Pfam Phospholipid-translocating P-type ATPase C-terminal 778 1017 IPR032630 -
Stsc30551g00005 1105 CDD P-type_ATPase_APLT 19 906 - -
Stsc30551g00005 1105 NCBIfam HAD-IC family P-type ATPase 716 834 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30551g00005 1105 NCBIfam HAD-IC family P-type ATPase 600 661 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30551g00005 1105 Pfam Phospholipid-translocating ATPase N-terminal 5 70 IPR032631 -
Stsc30551g00005 1105 SUPERFAMILY HAD-like 374 805 IPR036412 -
Stsc30551g00005 1105 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 1016 IPR023298 -
Stsc30551g00005 1105 FunFam Phospholipid-transporting ATPase 75 251 - -
Stsc30551g00005 1105 Gene3D - 434 585 IPR023299 GO:0000166
Stsc30551g00005 1105 PRINTS P-type cation-transporting ATPase superfamily signature 379 393 - -
Stsc30551g00005 1105 PRINTS P-type cation-transporting ATPase superfamily signature 628 638 - -
Stsc30551g00005 1105 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Stsc30551g00005 1105 ProSitePatterns E1-E2 ATPases phosphorylation site. 381 387 IPR018303 -
Stsc30551g00005 1105 Gene3D - 75 251 - -
Stsc30551g00005 1105 Gene3D - 602 790 IPR023214 -
Stsc30551g00005 1105 FunFam Phospholipid-transporting ATPase 449 592 - -
Stsc30551g00005 1105 SFLD Haloacid Dehalogenase 364 801 - -
Stsc30551g00005 1105 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 386 573 IPR023299 GO:0000166
Stsc30551g00005 1105 FunFam Phospholipid-transporting ATPase 602 789 - -
Stsc30551g00005 1105 SUPERFAMILY Calcium ATPase, transduction domain A 100 248 IPR008250 -
Stsc30551g00005 1105 NCBIfam phospholipid-translocating P-type ATPase 426 1023 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc30551g00005 1105 Pfam E1-E2 ATPase 99 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30551g00005 Stsc-Chr30551 27373 36652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30551g00005 1 1105 Primary Pumps ATPases AT5G44240 85.018 0.0 1991
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30551g00005 K01530 - gmx:100786505 2051.94