Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30551g00004 ATGAGAAACTCATTATCTTCCACGGTGAACAAGGGAAAGTCTACGGTGAACAAGGGAAAGCACGTCACTAGCAAGAAGGAGAGAAACAATAATGTTGCCAAAGAGGTTCATTACAGGGGTGTAAGAAAGAGGCCATGGGGCCGTTATGCTGCCGAGATCCGCGATCCCGGAAAGAAGAGCCGTGTCTGGCTCGGAACATTCGACACCGCTGAGGAAGCTGCCATGGCTTATGACGCAGCCGCCAGGCAGTTCCGCGGTGCCAAGGCCAAGACAAATTTTCCTTCCTCTTCCAGCCAAGACAGCGACTTTGCCGTCACCGACAAAAAATGTGGCATCATTCAGTCTTCTCCTGCTCCTGAGCTTGACGTGACGCGAAAGAAGGAAGTGGATCACTTTTTACCGTTTGTTCCGTACGGTGGTGGTGAGAACTTGGTGCGGCCAGTTCTTTTGCCTGAACCTGTTGGTAGAGTTGAGTTTGTTGGAGAGCAACATTCTCCTTTCCGATTCGAACAGGAAAGAGTGGATGAGTTGAATGCACGATCGGCCAGTGTGGCTCCAAGTGACTCAGATTCATCATCAGCAGCGGATTGCAAACCGAAAAGAGTTCTTAATCTTGATCTGAACCTTGCTCTACCCATTGATGCTTAA 648 0.4969 MRNSLSSTVNKGKSTVNKGKHVTSKKERNNNVAKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAMAYDAAARQFRGAKAKTNFPSSSSQDSDFAVTDKKCGIIQSSPAPELDVTRKKEVDHFLPFVPYGGGENLVRPVLLPEPVGRVEFVGEQHSPFRFEQERVDELNARSASVAPSDSDSSSAADCKPKRVLNLDLNLALPIDA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30551g00004 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 174 - -
Stsc30551g00004 215 FunFam Ethylene-responsive transcription factor 2 36 95 - -
Stsc30551g00004 215 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Stsc30551g00004 215 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Stsc30551g00004 215 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Stsc30551g00004 215 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Stsc30551g00004 215 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Stsc30551g00004 215 MobiDBLite consensus disorder prediction 1 17 - -
Stsc30551g00004 215 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Stsc30551g00004 215 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Stsc30551g00004 215 MobiDBLite consensus disorder prediction 1 39 - -
Stsc30551g00004 215 MobiDBLite consensus disorder prediction 20 39 - -
Stsc30551g00004 215 CDD AP2 37 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30551g00004 Stsc-Chr30551 22457 23224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30551g00004 19 213 AP2-EREBP Transcription Factor Family AT5G44210 44.660 2.64e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc30551g00004 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30551g00004 K09286 - qsa:O6P43_000758 160.229