Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30549g00002 ATGGCAGGATGGTCTACTTGGTCAAATGGGTCGTCCTTAGATTTCAATGAAGTTGAGATTTTTGATGTATGTAATGGTAATGACTGTAGGAATGTAAAAGATCATGCTGATAATGCTGACCATGACAAAGTTAAAACCTTGTTTGATAAAGTTTTTCCGGTATACCTAAAGGAGAATTGTTCTCATGGCATTGTTCGGCCTATGCCGGTTTTGCTGGGCGATGGACAAGCAGTGGATTTGTACAAACTCTTCTCTCTTGTGAAGGAACTAGGGGGATATGATTTTGTGTCGAGAAACGGATTGTGGGGTTATGTGGCAAAGGAACTGGGTTTGAACCACCAAGTTTTGGCGTCGATGAAATTAATTTTTGATAAGTATCTGAATGATTTTGAAGAATGGCTCACGAAGACTTTTAAAGAGAAACGTTTCAGAAACGGAAATCATGGGTGTGATTGGGGTATTAAGTCGTTGCCATTAGAGCTAGAGAAAGAATTGAGAAGCCTATTACTAAACCTAAAGGAGAACGATGTTGGGCTTGTCAAGTTGGAATCAAATGCAATAAGCGAGTATATTGATTTGGTTAACCACAAGGAAGATACAAATTTATTGGACACCAAAAATCAGAAAATAAATACATATGGCGATGTCCAACATTCCAATGTTGATGATGACGAAAAAACTTGTAAAAATGTTAAGGATGACTCTGTCTCCTTGAGTACCTTGATTGCTGAGAATGGAGGTGGCTCTCGCAAGCGCAAACGGGAACCATTATCTGGAATGCTGAACTGGGTTAGGCAAGTTGCAAAGAATCCTCTTGTTCCTTTACAGCAAACATTACCAAAACCATCAAAGTGGAAGGAGTATAAAGGCAATGACTTTTTCATCCAGTTACTGAGGGCAAGAGAGGCTCGGTTGGTGAAACCATGCGCACAACCTAACAATGAAACATCTTCTTCACAGAAGCTGAAGATGTGCCCAGATATGTACCAGGATCATGTTGCACCTCATCACCATTCTGCTGCAAGACTGAGATGTAGTGAAAGGCTGCCAACACCTGTTAAATCTCGCACATGCTCTTGTTGCAATTCATGTTCTCCCATTGGGAAGAAATTAACAAGTTCAGTCAATACGAAGGCCAAAAATTGTGTCCCGGACAAAGCAACTGCAACAGCGGATAAAACAGCTGCAACAGTAGATCCATCGACTGCAAGGACAATGACTGAAAAGTCTGGAGAAGAAGTTATCGAAAAGCATGTTTCGGTGGGTCCTCTTTATCAAGCAGATGTCCCAGAGTGGACAGGTGAAGTTTGTGAGAGTGACTCAAAGTGGTTAGGCACTCAAGTATGGACTCAGAAACATAACTTAGACCTCCCGAGTGAAAAGGATCTTGTAGGGAGAGGAAGACATGGCAATTGTGATTGTCATTTTAAAGGTTCTGTTGAGTGTGTTAGATTTCATATTGCCGAAAGCAGGATGAAATTGAGGCGCGACCTGGGTTCTGCATTTTACCTTTGGGGATTCAATCGCATGGGTGAGGAAATTTCGCTTCAATGGACAGCTGAAGATGAAAAGAGATTTAAGGATTTGATGAGTTTGAGTTTTCCATCTCAAAACAAGTCTTTCTGGAGCAGCAAATCCAGATACTTTCCAGACAAGACGAGAAGGGACATGGTGAGTTATTACTTCAATGCGTATCTTCTTCAACTAAGAAGCTATCAGAACCGCGTGACTCCGAATAATGTTGATAGTGACGAAGATGAAGTGGAATTTGGATCTTTTAGCGAAGGTTTTGGGATGGGAGCTCTCAAAATCCCAGGCTCCAATTTCCTGGAGTGTTCACAGAACAAGCAATGCACTGATTTGGATTAA 1869 0.4136 MAGWSTWSNGSSLDFNEVEIFDVCNGNDCRNVKDHADNADHDKVKTLFDKVFPVYLKENCSHGIVRPMPVLLGDGQAVDLYKLFSLVKELGGYDFVSRNGLWGYVAKELGLNHQVLASMKLIFDKYLNDFEEWLTKTFKEKRFRNGNHGCDWGIKSLPLELEKELRSLLLNLKENDVGLVKLESNAISEYIDLVNHKEDTNLLDTKNQKINTYGDVQHSNVDDDEKTCKNVKDDSVSLSTLIAENGGGSRKRKREPLSGMLNWVRQVAKNPLVPLQQTLPKPSKWKEYKGNDFFIQLLRAREARLVKPCAQPNNETSSSQKLKMCPDMYQDHVAPHHHSAARLRCSERLPTPVKSRTCSCCNSCSPIGKKLTSSVNTKAKNCVPDKATATADKTAATVDPSTARTMTEKSGEEVIEKHVSVGPLYQADVPEWTGEVCESDSKWLGTQVWTQKHNLDLPSEKDLVGRGRHGNCDCHFKGSVECVRFHIAESRMKLRRDLGSAFYLWGFNRMGEEISLQWTAEDEKRFKDLMSLSFPSQNKSFWSSKSRYFPDKTRRDMVSYYFNAYLLQLRSYQNRVTPNNVDSDEDEVEFGSFSEGFGMGALKIPGSNFLECSQNKQCTDLD 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30549g00002 622 SUPERFAMILY ARID-like 47 136 IPR036431 GO:0003677
Stsc30549g00002 622 SMART bright_3 43 136 IPR001606 GO:0003677
Stsc30549g00002 622 Gene3D - 30 147 IPR036431 GO:0003677
Stsc30549g00002 622 ProSiteProfiles ARID domain profile. 42 135 IPR001606 GO:0003677
Stsc30549g00002 622 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 38 619 - -
Stsc30549g00002 622 SMART ARID_2 39 131 - -
Stsc30549g00002 622 ProSiteProfiles ELM2 domain profile. 417 463 IPR000949 -
Stsc30549g00002 622 CDD ARID 45 131 - -
Stsc30549g00002 622 Pfam ARID/BRIGHT DNA binding domain 60 131 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30549g00002 Stsc-Chr30549 25684 29370 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc30549g00002 ARID 1.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30549g00002 - - gmx:100819320 692.189