Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30549g00001 ATGGGCGGTTGTTGCTGTTGTTGTTCTCCCAAAGAGACTGAATTGAGCGCTCCAACTGCATACTACTATTACCCAAGAGCATCAGAGGAGCATGTTCCACTGTCATCTCACCAGGGTGCTGCCTCTGCTTTCTCTGGGAGACTCTTAGTTGATACTAATCTAGATACTTCTAGCCCCGATACTTACAGACCACCTCCTGCTCCTATTCCTTTCAATGTCCCTTTAGGTACCACTCAAATACCACCTGTGGCTCAAGAAATTGTTGGAGACAAGAGCAATGCTTCCTTACAATCTACGAATTCTAATTCAATTCAAGAACCAGTTGCTGGAGACAATCATGGAACCTCGGTTAAATTGGAAGAGCTGAAAGAATCAGAAGGCGGAGCTCAGACTGATTTAGAGCTTGAGTCAACTAAGGATTCTGAGATTGAACTTCCAAAGTTGGCAGAACCTATAAATTTAGCTGAAGAGGAGGATTCGTGCCCAATTTGTTTAGAAGAGTATGACAAAGAGAATCCAAAACTCAACACCAAATGTGACCACCATTTTCACCTTGCATGCATCCTGGAGTGGATGGAAAGAAGTGAAACTTGCCCTGTGTGTGATCAGGAAATGGTTTTCAACCCTCCCATTGAATAA 639 0.4351 MGGCCCCCSPKETELSAPTAYYYYPRASEEHVPLSSHQGAASAFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVPLGTTQIPPVAQEIVGDKSNASLQSTNSNSIQEPVAGDNHGTSVKLEELKESEGGAQTDLELESTKDSEIELPKLAEPINLAEEEDSCPICLEEYDKENPKLNTKCDHHFHLACILEWMERSETCPVCDQEMVFNPPIE 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30549g00001 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 207 IPR013083 -
Stsc30549g00001 212 SMART ring_2 161 201 IPR001841 -
Stsc30549g00001 212 SUPERFAMILY RING/U-box 154 208 - -
Stsc30549g00001 212 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 208 - -
Stsc30549g00001 212 FunFam Putative E3 ubiquitin-protein ligase RHB1A 138 206 - -
Stsc30549g00001 212 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Stsc30549g00001 212 Pfam Ring finger domain 159 201 IPR001841 -
Stsc30549g00001 212 CDD RING-H2_AIRP1-like 157 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30549g00001 Stsc-Chr30549 4147 6954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30549g00001 1 208 C3H Transcription Factor Family AT5G41350 55.189 3.51e-73 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30549g00001 - - gmx:100816369 375.941