Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30546g00001 ATGGCACATCATCATCATCATGATCAAGAACACAACAACATAGATTCTTCTTCTTTGTACTGCTTAGAACAACATCATTTTGATGATGATGATGATGAAGAACATGTGTTTCTAGAACAGGACATGTTCTGTGATGATTCAGAGTTGAAAACTCTTGTATCCAAACAAGAAGAACAAGTCATTGATGATGATGATGATGAAGAGTTATTGGAAAGAAGAGAAGCAGTGGAATGGATTCTGAGAGTGAATGAAAATTACTCATTCTCTGCTCTCACAGCTTCTCTTGCTGTAAACTACCTTCACAGGTTCCTCTTCAAGATGAAGATGAAGAAGAAGCAGCCATGGTTGACTCACCTTGCTGCTGTTGCTTGCATCTCTCTTGCTGCTAAACTTCAAGAGACACAAGTTCCTCTTCCTATTGATTTACAAGTGGAGGACAGCAAATATGTGTTTGAGGCAAAATCAATAAAGAAAATGGAGATTTTGGTACTTTCAAGTCTTGAGTGGAAGATGAATCCAGCAACACCTCTCTCTTTCATTGATTTCATCACAAGAAGACTTAAATTGAAGGGTTTTCTTTGTTTTCAGTTCCTCCACCGATGTGAATCTCTTCTTCTTTCTCTCTTACCAGATTCCAGGTTGATTGGTTTTGTTCCTTCTGTGTTGGCAACTGCTACAATGATGCATGTATTTAACAATGTGAAGCCTTGTTTGGCATCTGAATACCAAAATCAGATCTTGGCTATTCTTGGAATAAATAAGGAGAAGTTAGAAGAATGCTACATTGTGATATTGGAGGTTGTATCAGAAACTGGGTACAAATACAAAGAATCCAAGAAACGCAATTTTGGATCATCAATTATTCCAAGTAGCCCAAGTGGTGTAATTGATGTCTCATTTAGCTCTAATGATGATGATCATACCTCTAATGATTCTTCGGAATTATTATTAGTGTCTGCTAATAATAATGATTCTGTTTCATCATCACCAAACAAAAACAACAAGAAGAAGAAGCCTAGGACTTAA 1026 0.3674 MAHHHHHDQEHNNIDSSSLYCLEQHHFDDDDDEEHVFLEQDMFCDDSELKTLVSKQEEQVIDDDDDEELLERREAVEWILRVNENYSFSALTASLAVNYLHRFLFKMKMKKKQPWLTHLAAVACISLAAKLQETQVPLPIDLQVEDSKYVFEAKSIKKMEILVLSSLEWKMNPATPLSFIDFITRRLKLKGFLCFQFLHRCESLLLSLLPDSRLIGFVPSVLATATMMHVFNNVKPCLASEYQNQILAILGINKEKLEECYIVILEVVSETGYKYKESKKRNFGSSIIPSSPSGVIDVSFSSNDDDHTSNDSSELLLVSANNNDSVSSSPNKNNKKKKPRT 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30546g00001 341 Pfam Cyclin, C-terminal domain 175 277 IPR004367 -
Stsc30546g00001 341 Gene3D - 173 261 - -
Stsc30546g00001 341 CDD CYCLIN_AtCycD-like_rpt1 75 169 - -
Stsc30546g00001 341 MobiDBLite consensus disorder prediction 299 332 - -
Stsc30546g00001 341 SUPERFAMILY Cyclin-like 45 172 IPR036915 -
Stsc30546g00001 341 SMART Cyclin_C_2 174 291 IPR004367 -
Stsc30546g00001 341 Pfam Cyclin, N-terminal domain 54 172 IPR006671 -
Stsc30546g00001 341 SMART cyclin_7 77 165 IPR013763 -
Stsc30546g00001 341 SUPERFAMILY Cyclin-like 157 275 IPR036915 -
Stsc30546g00001 341 MobiDBLite consensus disorder prediction 299 341 - -
Stsc30546g00001 341 CDD CYCLIN_AtCycD-like_rpt2 175 264 - -
Stsc30546g00001 341 PANTHER CYCLINS 52 270 IPR039361 -
Stsc30546g00001 341 Gene3D - 71 172 - -
Stsc30546g00001 341 FunFam D6-type cyclin 57 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30546g00001 Stsc-Chr30546 10530 13302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30546g00001 7 281 Core Cell Cycle Gene Families AT4G34160 45.704 2.54e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30546g00001 K14505 - aprc:113874132 307.76