Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30545g00003 ATGGCTGAAGCTTTAGTGGCAGGATCATTCCTATCTGCTTCTGTGCAAACTTTATTGCAGACAATAACCTCAGTGCAGTTCCAAGACTTCTTCAGGAAGACATGGAATCTGAATGAATCAATCTTGGATGAGTTGGAAACAACGCTGTTGACTCTTCAGGCTGTCCTCAATGATGCAGAACAAAAGCAGATTACCAACCCTTCTGTCAAAGAATGGCTTCAGAGGCTAAAAGATGCAGTGCATGAAGCAGAGGACTTGTTAGATGAAGTCAACACTACAGCACTAAGGCACAGTTTGGAGGATCAGCATCCACATCAATCTTTTTCAGGCAAGGTAAGGAGGTTTCTTTGCTCCAGTTTTCAGTTTCATAGGGACATGAACTTCAAATTAGAGGCCTTGTGTCGAAGGCTCCGACTATTTGATGCACAGAAGAATAGCCTTGGCTTGCAATTTGTTAACATGAGGGTGTCGGTTAGAGCACCAACAAGTTCTGTGGCAAATGAGTTAGGTGTTGTTGGTAGAGATGGGGTGATTACCATTTTTGGCATGGCTGGTGTTGGCAAGACCACTCTTGCTCAGCTTCTGTACAATGATCATAGAGTTGAAGAGAGTTTTGATCTGAAAGCATGGACATCTGTTTCTGAAGTGTTTGATGCTACCGTGGTAACAAAAGCACTTTTGGAGTCTCTAGCTTGTAGGCATTTCAAAGGCGATAATCTAGACTTTCTCCAAATCCAATTGAAGCAAGTGGTTAAGGGGAAAAAGTTCTTGTTTGTGTTGGATGATCTTTGGAATAATAAATATGTGGAGTGGGATAGCTTGCGAGCGCCCTTCAGCGAGGGAAATCAAGGGAGTAGGATCATCATCACGACTCGCCATAGAGACATTGCTAAAATGACACACACATTCCCGATTTACTATTTAGAGCCATTGTCTCATGAAGATTGTTGGTCATTGTTGTCAAAGCATTCATTTGAAAACACTGATCCTACTAGAAGACAACCCAAGTTGGAAGTGATTGGCAGAAAAATTGCAGAAAAATGTGGTGGCTTACCTATAGCTGCAAAGACATTAGGAGGCATTTTGAGGTCCAAAGTGGATGAGAATGAATGGACCAATATTTTGAATAGTAATATCTGGGAGCTACTAAATGATGATGTTCTACCTGCTCTTTGGTTAAGCTATATCTATCTCCCTGCTAGTTTGAAGAGGTGTTTTGCTTATTGTTCGATTTTCCCAAAATGGTATCCTTTGAATAGGAAACATGTAGTACTACTTTGGATGGCAGAGGGTTTGCTCCAACAAGGCCAGGAGAAATCAATGGAAGAAATGGGTGATCAATATTTTGATGAGCTATTGTCAAGATCCATAATTCAGCAAGAGGGAGAGTGTTATGTAATGCATGATCTGATCAATGACTTGGCCACAGTTGTGTCAGGTAAGAGTTGTAACAGGTTTGAGGGCTCTGAAATAACCGAAAGCATCCGCCACTTTTCCTATTCGAGAGGTAAGTATGACTCTTCAACCAAGTTTGAAAGCTGTTGTAGAGCAAAGTGCCTGCGGACCTTCCTCCCAATGCCGGTGACCGATGATCCAACCTTATGGTGGTACTGGAAACATTATCTGACCAGAGGGATTACACACGATTTTCTACTGAGACAAAGACGGCTGCGAGTGCTATCGTTGGCGAACTACAATAACATTAATGAATTGCCTAGCTCAATAGGTAATTTGTTACACTTGAGGTTCTTGGACCTCTCTTTTACCCCAATCAAAAGGCTGTCTAGTGCAATATTTAAGCTTTACAATCTTCAAACATTAAGATTGTTGTACTGTCAGAACCTCACTGAATTACCTTCAGAGATAAGAAACTTGGTTAACTTGCGCCATCTCGACATAACTGGCACAAAGTTAAAGATGTCAAGACAGATAAGAACCTTGCAACACCTCCAAACCCTGAGTACATTTGTGGTTGACAAAAATTCTGACGGACTAAAGCTTAAAGATCTGCAATGCTTCCAGAAACTGCAGGGAAAACTATCAATCATGGAATTGTGCAGTGTGGATCAAACAATAGATGCAGTTGAAGCTAACTTGAAAAACAAAGAGTTCATTGAGGAATTGGTGTTAGATTGGAGCAAGCAAGCTGATCAAGGTTTAAGAACTGAAACAGAGGTGCTTGAGCATCTGCAGCCATCAACCAACGTAAAGAAGTTCATCATAGAGTCATACAATGGCACCAAATTCCCAAGTTGGTTTGCAGATTCTTCGTTTTCGAATATTGTGTTCTTGTCTATTAGTGGCTGCAACTATTGCTTATTTCTCCCACCACTCGGGCAACTACCTTCTCTCAAGGAGCTTTATGTAACAAGGATGAAAACAATAAAGGTTATTGGTTCTGAGTTCTATGGTACTTCTAGTTCTTCCTCTCCTTTCCAACCATTTCCATCGCTTGAGATCTTATCATTTGAGGAAATGCTAGATTGGGAGGAATGGCATGTGTTCAGTATGGATGGCGTAGAGTTCCCTTTTCCCTCTCTTAAGCATCTACGCTTGTACAACTGTCCTAAGCTGAAGGGTCATTTGCCGCGCCATCTTCCTTCTAGTTTGACAGATGTTAACATATCATATTGTGATCAATTGGAAGCATCTACTCTTCATTGGATTACAAAAACTAAAAGTTTGACTATCATTGATTTGGGTCATCATCTTTTGCCAATCCTTGAGATAGATTCACAATGCTCGCTGTCCTACATAAAGATCGAAAGAAGCGATAGGTTGATATCTTTTCCAAGAATGGTTCTTAGCAGCCATTGTCTCCGGGACTTGTATCTTACTAAGGTTCCATCCTTTACCTCTTTCCCAACCGAAAGCATGCCATCTCTGCGAACATTAATGCTATCAGAATGCAAGAATTTGGAATTCCTAGATGATGAAGCCTGCAGGAATTACAGTTCACTTGAGAATTTGATGATATGGGATAGTTGTCACTCTCTCACTTTGTTTCCATTTGGATCTCTTCCTGTACTAAAATATCTTCATATTTGGGGTTGCCCCAATCTCATATCAATTTCTTTCTCAAGTGCTGACACTTATGCACAGAACTTGTCAAATCTTCAAGTTTTGAGAATAAGCAACTGTCCTAATCTTGAATCATTTCCTCAAAGTGGATTGTCCACTCCCAACCTAATGGAATTGAAGGTCATGAATTGTGGAAAGCTAAAATCGCTACCGGAGCAGATGAACATTCTCTACTCTCTTCAAGATTTAGATATCTCTAATGTTCCGCAACTTGTTTCACTTCCTCAAGGTGGCTTGCCGCCGAAGCTACGATCAGTGTTCATAGGCTTTTGCAAAAGTCTATCACTTGTGGCTATAGGTGAGTATGGTTTCCAGTGGCTCAGTTCTCTTTTGAAGCTTGGAATTGGGGGTGATGATCTTGCCCAATCATTCATGGAAGAGAATTCATATGCATTTCAACATCTCACCGTTCTTCAAGAGTTTCACATTCTAAGGTGTTCAAAGATTGAGTCCTTGCCTGAAGATAGGTTACCTTCCACTCTTTTATTGTTGAGGATTCAAGATTGTCCTCTGCTTGAAGCAAGGTACAAAAATAGGACAAAGAAGCATTTATGTAAGATTTCTCACATACCTACCATAAGAATAAATGAAGAGGTCATAATATAA 3687 0.4063 MAEALVAGSFLSASVQTLLQTITSVQFQDFFRKTWNLNESILDELETTLLTLQAVLNDAEQKQITNPSVKEWLQRLKDAVHEAEDLLDEVNTTALRHSLEDQHPHQSFSGKVRRFLCSSFQFHRDMNFKLEALCRRLRLFDAQKNSLGLQFVNMRVSVRAPTSSVANELGVVGRDGVITIFGMAGVGKTTLAQLLYNDHRVEESFDLKAWTSVSEVFDATVVTKALLESLACRHFKGDNLDFLQIQLKQVVKGKKFLFVLDDLWNNKYVEWDSLRAPFSEGNQGSRIIITTRHRDIAKMTHTFPIYYLEPLSHEDCWSLLSKHSFENTDPTRRQPKLEVIGRKIAEKCGGLPIAAKTLGGILRSKVDENEWTNILNSNIWELLNDDVLPALWLSYIYLPASLKRCFAYCSIFPKWYPLNRKHVVLLWMAEGLLQQGQEKSMEEMGDQYFDELLSRSIIQQEGECYVMHDLINDLATVVSGKSCNRFEGSEITESIRHFSYSRGKYDSSTKFESCCRAKCLRTFLPMPVTDDPTLWWYWKHYLTRGITHDFLLRQRRLRVLSLANYNNINELPSSIGNLLHLRFLDLSFTPIKRLSSAIFKLYNLQTLRLLYCQNLTELPSEIRNLVNLRHLDITGTKLKMSRQIRTLQHLQTLSTFVVDKNSDGLKLKDLQCFQKLQGKLSIMELCSVDQTIDAVEANLKNKEFIEELVLDWSKQADQGLRTETEVLEHLQPSTNVKKFIIESYNGTKFPSWFADSSFSNIVFLSISGCNYCLFLPPLGQLPSLKELYVTRMKTIKVIGSEFYGTSSSSSPFQPFPSLEILSFEEMLDWEEWHVFSMDGVEFPFPSLKHLRLYNCPKLKGHLPRHLPSSLTDVNISYCDQLEASTLHWITKTKSLTIIDLGHHLLPILEIDSQCSLSYIKIERSDRLISFPRMVLSSHCLRDLYLTKVPSFTSFPTESMPSLRTLMLSECKNLEFLDDEACRNYSSLENLMIWDSCHSLTLFPFGSLPVLKYLHIWGCPNLISISFSSADTYAQNLSNLQVLRISNCPNLESFPQSGLSTPNLMELKVMNCGKLKSLPEQMNILYSLQDLDISNVPQLVSLPQGGLPPKLRSVFIGFCKSLSLVAIGEYGFQWLSSLLKLGIGGDDLAQSFMEENSYAFQHLTVLQEFHILRCSKIESLPEDRLPSTLLLLRIQDCPLLEARYKNRTKKHLCKISHIPTIRINEEVII 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30545g00003 1228 SUPERFAMILY L domain-like 466 898 - -
Stsc30545g00003 1228 FunFam Probable disease resistance protein At1g61300 143 302 - -
Stsc30545g00003 1228 Gene3D - 14 130 - -
Stsc30545g00003 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 409 IPR027417 -
Stsc30545g00003 1228 Gene3D Ribonuclease Inhibitor 540 915 IPR032675 -
Stsc30545g00003 1228 SUPERFAMILY L domain-like 819 1197 - -
Stsc30545g00003 1228 PANTHER DISEASE RESISTANCE PROTEIN RP 42 1012 IPR044974 GO:0006952
Stsc30545g00003 1228 Coils Coil 69 93 - -
Stsc30545g00003 1228 Gene3D - 393 477 IPR036388 -
Stsc30545g00003 1228 PRINTS Disease resistance protein signature 348 362 - -
Stsc30545g00003 1228 PRINTS Disease resistance protein signature 250 264 - -
Stsc30545g00003 1228 PRINTS Disease resistance protein signature 177 192 - -
Stsc30545g00003 1228 PRINTS Disease resistance protein signature 957 973 - -
Stsc30545g00003 1228 Pfam Rx N-terminal domain 15 103 IPR041118 -
Stsc30545g00003 1228 Gene3D - 161 303 IPR027417 -
Stsc30545g00003 1228 Gene3D Ribonuclease Inhibitor 937 1107 IPR032675 -
Stsc30545g00003 1228 Gene3D - 310 392 IPR042197 -
Stsc30545g00003 1228 Pfam NB-ARC domain 176 376 IPR002182 GO:0043531
Stsc30545g00003 1228 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30545g00003 Stsc-Chr30545 31432 35282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30545g00003 568 639 WRKY Transcription Factor Family AT4G12020 42.466 2.22e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30545g00003 - - ahf:112705380 2172.51