Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30544g00005 ATGGCTCCATTAGAAAAAAAAGGGATTATTAAGCTGTTTGGGATAACGATCACGTTGCATGCAGCAGAAAGAAAAGAAGATGAGAAAAGCAGCAATGGTGGAAGCGAAGAAGAAGAAGATGATGGAGCAGATCAAGAAGAGATGAAGAAACCAAACAAGATCATAGCATGCCCGAGGTGCAAGAGCATGGACACAAAGTTTTGTTACTTCAATAACTACAACGTTAATCAGCCAAGGCATTTCTGCAAGGCCTGCCACAGGTATTGGACCGCCGGAGGGGCCCTTCGCAACGTCCCGGTCGGCGCAGGCCGCCGAAAGGGCAATAAGCTCCCACCAACGCCCCCTGCCGCCGCCCGTCACGGTGGTGCCGCCATCTATGAATCATCAGCATCCACCGTTCAGAAGTTTGGATTAGATGATGAAGAGGGTTTGGTTTTGGACGAGTGGGATGTGGCCACCGTGATTCACGGTGGTTTCCGGCAGATTTTTCATGAGTCGTCTAAACGGCGGAGAACGAGCTCTGAGGATGGTCAACCTTGTTAA 543 0.5009 MAPLEKKGIIKLFGITITLHAAERKEDEKSSNGGSEEEEDDGADQEEMKKPNKIIACPRCKSMDTKFCYFNNYNVNQPRHFCKACHRYWTAGGALRNVPVGAGRRKGNKLPPTPPAAARHGGAAIYESSASTVQKFGLDDEEGLVLDEWDVATVIHGGFRQIFHESSKRRRTSSEDGQPC 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30544g00005 180 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Stsc30544g00005 180 MobiDBLite consensus disorder prediction 23 49 - -
Stsc30544g00005 180 Pfam Dof domain, zinc finger 53 108 IPR003851 GO:0003677|GO:0006355
Stsc30544g00005 180 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Stsc30544g00005 180 PANTHER CYCLIC DOF FACTOR 2 25 137 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30544g00005 Stsc-Chr30544 35776 36478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30544g00005 1 180 C2C2-Dof Transcription Factor Family AT1G29160 48.148 1.93e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc30544g00005 zf-Dof 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30544g00005 - - aip:107634834 277.715