Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30543g00005 ATGATGGTACCTCATAAGTTGCATAGTGTGATTGCAATAGCAATAATTGTTGTTGTTGCTACACAGATAAATGTGGGAGTGAATTCAGCTTCAGAAGCTGATAAGGTAACCAATTTGCCAGGGCAGCCAGCAGTGAAGTTCCAGCAATATGCCGGCTACATTACTGTGGATGAGAAGCAACAAAGATCTTTGTTTTACTACTTTGTTGAAGCAGAACTTCAACCTGCTTCCAAGCCATTGGTTCTATGGCTAAATGGAGGGCCTGGTTGTTCTTCTGTTGGAGCAGGAGCATTCGTCGAGCACGGTCCGTTTAAACCGAGCGGAAATGTTCTTCTCAAGAATGATTATAGTTGGAACAAAGAGGCAAATATGCTGTACTTGGAATCACCTGCTGGTGTTGGTTTCTCATACTCTGCCAATAAATCTTTCTATGAATATGTTGATGATGAAATGACAGCAAGGGACAACCTTGTTTTCTTACAGAATTGGTTCACTAAATTCCCAGAGTACAAAAGCAATGATTTCTTTATCACAGGGGAGAGTTATGCAGGTCACTATGTGCCACAACTTGCACAACTCATTGTTGAAACCAAGACAAAGTTCAATTTCAAGGGTATAGCAATAGGAAACCCTCTTCTGGAATTTAACACAGATTTCAATTCAAGGGCAGAGTATTTCTGGTCCCATGGACTAATATCTGATTCAACTTATGAAATTTTCACTAAAGTCTGCAATTACTCGGAAATTAGGAGACAAAGTCAAAGTGGGAGATTAAATGGGGTTTGTGCAGCTGTGAATAAAATAGTGTCAAGTGAAGTTGGGAGATATGTTGATGCATATGATATCACTCTTGATGTGTGCCTTTCATCAGCAGATCAACAGGCTTATGTGCTTAATCAACTTAGCCAAGTGCAAGAAGGAGAGAAGATTGATGTTTGTGTGGAAGATGAAACAATCACATATTTGAACAGAAAAGATGTGCAAAAAGCTCTCCATGCTAAGCTTGAAGGGATCACTACATGGTCAACTTGCAGCAACGTTCTCAAATATGACATGCAGAATCTAGAGATTCCAACCATTTCTATCCTAGGAAAACTTGCTGAGTCCGGTATTAGAGTTCTAGTATACAGTGGTGATCAAGATTCAGTTCTGCCATTAACTGGAACAAGAATACTTGTGAATGGGTTGGCTAAGGACATGGGACTTAATACAACAGAGTCATATAGAGCATGGTTTGGAGGAAGACAGGTAGCTGGATGGACACAAGTATATGGTGACATGTTATCGTTTGCTACTATAAGAGGAGCATCTCATGAAGCTCCATTTTCACAGCCAGAGAGATCACTTGTGCTCCTAAAAGCATTTGTTGAAGGAAAATCCCTTCCAGGAATAATCTCTCAACCATGA 1407 0.4016 MMVPHKLHSVIAIAIIVVVATQINVGVNSASEADKVTNLPGQPAVKFQQYAGYITVDEKQQRSLFYYFVEAELQPASKPLVLWLNGGPGCSSVGAGAFVEHGPFKPSGNVLLKNDYSWNKEANMLYLESPAGVGFSYSANKSFYEYVDDEMTARDNLVFLQNWFTKFPEYKSNDFFITGESYAGHYVPQLAQLIVETKTKFNFKGIAIGNPLLEFNTDFNSRAEYFWSHGLISDSTYEIFTKVCNYSEIRRQSQSGRLNGVCAAVNKIVSSEVGRYVDAYDITLDVCLSSADQQAYVLNQLSQVQEGEKIDVCVEDETITYLNRKDVQKALHAKLEGITTWSTCSNVLKYDMQNLEIPTISILGKLAESGIRVLVYSGDQDSVLPLTGTRILVNGLAKDMGLNTTESYRAWFGGRQVAGWTQVYGDMLSFATIRGASHEAPFSQPERSLVLLKAFVEGKSLPGIISQP 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30543g00005 468 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Stsc30543g00005 468 FunFam Carboxypeptidase 359 458 - -
Stsc30543g00005 468 Gene3D - 360 458 - -
Stsc30543g00005 468 Pfam Serine carboxypeptidase 41 458 IPR001563 GO:0004185|GO:0006508
Stsc30543g00005 468 Gene3D - 313 348 - -
Stsc30543g00005 468 ProSitePatterns Serine carboxypeptidases, histidine active site. 428 445 IPR033124 GO:0004185
Stsc30543g00005 468 Gene3D alpha/beta hydrolase 30 289 IPR029058 -
Stsc30543g00005 468 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 445 IPR001563 GO:0004185|GO:0006508
Stsc30543g00005 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Stsc30543g00005 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
Stsc30543g00005 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Stsc30543g00005 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 428 441 IPR001563 GO:0004185|GO:0006508
Stsc30543g00005 468 SUPERFAMILY alpha/beta-Hydrolases 27 462 IPR029058 -
Stsc30543g00005 468 FunFam Carboxypeptidase 29 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30543g00005 Stsc-Chr30543 43178 51659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30543g00005 321 461 Calmodulin-binding Proteins AT2G22960 26.950 5.53e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30543g00005 K16297 - gmx:100805028 788.489