Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30541g00007 ATGATGACGTGTCCGGTGGAGGCAGGTGGTGGCTCCGCTGGTAGGACGGTGGTGGTTGGAGTCAAATTGGATTCTCCCAGCAAGGAGCTTCTCACGTGGGCATTGGTCAAGGTTTCTCAGTCTGGTGATACTGTTGTTGCTCTGCATGTTCTTGATCAAAATGAAATTGTGAATAGAGATGGGAAATCCTCTCTGCTTTCTCTTGTTAAGGCCTTTGATCCTGTTCTAGCTGTTTATGAAGGCTTCTGCAATTTGAAACAGGTGGATCTCAAGCTCAAGATTTGCCGTGGTTCATCAGTGAAGAAGATTTTGGTGAGGGAAGCCATTGCTTATTCTGCAACTCATGTTGTGCTTGGAACATGCCATGGCCACCATAAAATCCGCTCATCCACCTCTGTGGCTAAGTACTGTGCCAAGAAGTTGTCCAAAGACTGTTGTGTTCTTGCCATTAACAATGGCAAAGTTGTCTTCAAGCGTGATGGCTTGCCACCTACTGCCACCACCGACTCACAAGGTCACAGAAATGGTTTGCTTGGTTCAATTCACTGGAAAATCAGTAAGAGTACAAAAGTGCTGAGTGATGAGAGTGCAGGGAGTGATGCTGGTAAGAGTGCTGGCGAATTTTCGGATCACAGTTTGGCGAAGATTTTAATGGATACTACTGAGTTTGATAGGAAAGATAGCTGCTCGGTTTGTGATACAACTCCAGCATTGCCGCCGCTGCCAGACTCTTCTTGCCACCAATCTTCAGAAGAAGAATCTTGCAGTGATGGTGTTTGTGATAATTCCTTAGCTATAGTGCCTGTTCCGGCTGTGGATACCGCACCACCTGAATTGAAACCAGGCTGGCCATTACTTCACCAGAGAATCTTATCAGAAACTCAATTTCCCGAAAGGCTATCGGCGCGCCAGATCTCTGTGGTCCAATGGGCAATGAGGTTGCCTAGTAGGAATCTTTCATATTCTTCAGATCAAGATCATAAGCCTCAAGATGAATCTGTGCCTTTGTATAGTGAAACTGGTGCTATTGTTCCAGTAGATTATGGAATAAATACCGTTTCTTCGCCTGAACCGAACTCAGAAAGTATTCCTCTTGAATTGGCTAGCCTTCATGGGAAATACTCGTCAATTTGCAGATTGTTTGAGTACCAAGAACTTGTATCAGCAACATCGAATTTCTTGCCTGAGAACTTGATTGGGAAAGGAGGAAGCAGTGAGGTTTATAGAGGGTGCCTTCCTGATGGACAGGAACTTGCTGTGAAGATCCTAAAGCCTTCTGATGATGTGTTGAAGGAGTTTCTTCTTGAAATAGAAATCATCACTACCTTGAATCATAAAAACATTATATCTCTTCTTGGATTCTGCTTTGAGAATGGGAATCTTCTTCTTGTCTATGATTTGTTATCAAGAGGAAGCCTTGAAGAAAATCTTCATGGGAGTAAGAAGAATTCTCTTGTGTTTGGTTGGAGTGAGAGATATAAGGTTGCGATGGGCGTTGCCGAGGCTTTGGATTATCTGCACTGCAAAGATGATCAGCCCGTGATCCATCGCGACGTAAAATCTTCAAATGTATTATTATCTGAGGATTTTGAACCTAAGCTCTCTGATTTTGGACTGGCTAAATGGGCATCAACTTCATCATCTCAGATAACTTGCACAGATGTTGCTGGAACCTTTGGCTACTTGGCTCCTGAATACTTCATGTATGGCAAAGTCCATGATAAGATCGACGTCTATGCTTTCGGTGTCGTGCTCCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGGAGACTTGCCAAAAGGTCAAGAGAGTCTTATCATGTGGATTTCTAAGCTCCTTCATGGTGATGCTGATGTGATCAAGTGGGCAAGGTCGGAAGTTAATGCAAGGGAAGCACCAGAAATGCTTGAAGATGAAGCATGTCCCCCAAGCAACCTGCAGTCACATCTTAACCTTGCACTCCTTGATGTGGAGGATGACTTGCTCTCCATGTGCAGTGTCGAGCAGCACGTCTCGCTGGAGGACTACTTGAGAGGCCGTTGGAGCCGCTCCTCGAGCTTTGACTGA 2070 0.4488 MMTCPVEAGGGSAGRTVVVGVKLDSPSKELLTWALVKVSQSGDTVVALHVLDQNEIVNRDGKSSLLSLVKAFDPVLAVYEGFCNLKQVDLKLKICRGSSVKKILVREAIAYSATHVVLGTCHGHHKIRSSTSVAKYCAKKLSKDCCVLAINNGKVVFKRDGLPPTATTDSQGHRNGLLGSIHWKISKSTKVLSDESAGSDAGKSAGEFSDHSLAKILMDTTEFDRKDSCSVCDTTPALPPLPDSSCHQSSEEESCSDGVCDNSLAIVPVPAVDTAPPELKPGWPLLHQRILSETQFPERLSARQISVVQWAMRLPSRNLSYSSDQDHKPQDESVPLYSETGAIVPVDYGINTVSSPEPNSESIPLELASLHGKYSSICRLFEYQELVSATSNFLPENLIGKGGSSEVYRGCLPDGQELAVKILKPSDDVLKEFLLEIEIITTLNHKNIISLLGFCFENGNLLLVYDLLSRGSLEENLHGSKKNSLVFGWSERYKVAMGVAEALDYLHCKDDQPVIHRDVKSSNVLLSEDFEPKLSDFGLAKWASTSSSQITCTDVAGTFGYLAPEYFMYGKVHDKIDVYAFGVVLLELLSGRKPISGDLPKGQESLIMWISKLLHGDADVIKWARSEVNAREAPEMLEDEACPPSNLQSHLNLALLDVEDDLLSMCSVEQHVSLEDYLRGRWSRSSSFD 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30541g00007 689 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 14 151 - -
Stsc30541g00007 689 Pfam Protein kinase domain 397 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30541g00007 689 ProSiteProfiles Protein kinase domain profile. 393 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30541g00007 689 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 362 467 - -
Stsc30541g00007 689 ProSitePatterns Protein kinases ATP-binding region signature. 399 421 IPR017441 GO:0005524
Stsc30541g00007 689 CDD USP_Like 16 150 - -
Stsc30541g00007 689 Gene3D Transferase(Phosphotransferase) domain 1 468 670 - -
Stsc30541g00007 689 Gene3D HUPs 14 152 IPR014729 -
Stsc30541g00007 689 PANTHER OS08G0249100 PROTEIN 76 615 IPR046958 -
Stsc30541g00007 689 Gene3D Phosphorylase Kinase; domain 1 365 467 - -
Stsc30541g00007 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Stsc30541g00007 689 SMART serkin_6 393 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30541g00007 689 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 15 149 - -
Stsc30541g00007 689 SUPERFAMILY Protein kinase-like (PK-like) 374 643 IPR011009 -
Stsc30541g00007 689 Pfam Universal stress protein family 15 147 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30541g00007 Stsc-Chr30541 42786 46461 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30541g00007 378 614 Receptor kinase-like Gene Family AT5G56890 47.280 6.40e-64 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc30541g00007 Pkinase 6.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30541g00007 - - qsa:O6P43_015127 903.279