Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30541g00005 ATGGCTGTGGTGCCTGAGTGTGTTATTCCTAAAACTTCAAAGGACCAGTCTTTCAATTTTTCAAGGTCAAAGCCATTTACTTCTGCAGCCCGTGTATTAAAACCTCGAACCTGGCTTCGAACAGGTAATAATTATCCTGGTTCTTTATCTGGTAGCAAGCCTTCTTCGACAACTACTCCTCGTAACAAGTTAATTCCACAAATGAAAGGGAACACTCAAAATACTCTTTATATCCACAAGGGTAACAGTCTTGTTAGGAAAGTTATCCCTGTTTCTGCTTCAACATTGATGTCCGTTGCTAACCAGTTGCCATCTTTGAGCTCTGATAACTTTCAGAAGAGCATCAGATCTGAATGCATGGTTAAAGTTCCAGGTCAATCAGGTGCCTTGAAAACTGGAGTAAATGGTGTCAAACTGGAATTGCTGAAATATTCTGAAACATATGAAAATCAAATGGGTCCTGACAATGGCGGAGCTGGCCAAGTTGAGATTTCTTCTTCAAATGCAAAGAAATTAGTATATATGAAGCCCAAGTCGAATACGTTAGTTGCATCTATGAATTTGAGTGATCTCTCTGTCTCTGCTGATGGCAAGACTCAAACAGCATACTCCAATGGCTACTACAAGAAGAGAAAAAATCAGTTAATAAGGACTTCATTTGTTAGTCATATCAGCCCAACACTTACAATGCAGGATAGTAATGTAAATTCTGATGGTCCATTGGGTTCTAAAGAGATTTGTAGCAGGTGTACTAAGAAGTGGTCACAGAAAGTTGCTGGGAGTTTGTGCAAACCTTTAAAAGCCCCACTTGTTTGGACCCTTTCATCAAAACACAACATTGACTCAGGGCATTATGGGAAGATCTTGCCACAGTTGTTTCAATGGAAAAGATCAACATTACGGAGAAGATTTATTCACAATCATGATTTAAGCTCCAATTCTACTCCCTCATCAGCAAACAGCAAGAAATTGCTTCTTTTAGGGAAGAGGGATACTGTTTACACCAGGTCAACCCATCGGTTTTCTCATCAGAAACCCAAGGCATTAGATGCTGGTGGGTCCATTTTAAAAGGGTCCAAGTTCACTGGCAGGCACTCTGAGAAGATTCATGAGGAAGCACTTGCTGTTGCTGTATTGGAGAGGAAAACAAGAGAACAGAAAGGCCTGGCTGCCAAAGGTTCTATCCCAAGAAGATTAGTGATTGGAAAAAATGTGTATTTCCAAATTGGCAAAGGTAATCAGCTTATTAGGGACCCAAAGAAACGAACTTGGATTTTGGCTAATGAAAAAGTTAGATGGAGTCTGCACACTGCTAGACAGCGCTTGGCACGAAAGCAGAAGTATTGTCAGTTTTTTACGAGATTTGGGAAATGTAACAAGGATGATGGGAAGTGTTCTTATATTCATGATCCCTCAAAAGTTGTTTTCTGTACTAAGTTTCTAAATGGTTTATGTTCTAATGGCAACTGCAAATTAACTCATAAGGTTATTCCGGAGAGAATGCCAGATTGTTCTTATTTTTTGCAAGGTTTATGCACAAACCGAAATTGTCCTTACAGACATGTCAATGTGAATCCTAAGGCTTCTCTTTGTGGAGAATTTCTCAAGGGCTATTGTGCTGATGGAAACGAGTGCCGGAAGAAGCACAGCTATGTCTGTCCGACCTTTGAAGCAATGGGAAACTGCGAAGAAGGAACCAAATGCAAGCTTCATCACCCGAAGAAACAGAGTAAGGGAAAGAAAAGGAAGAGGTCTGAAGATGAGAATGTCGGAAGAGCACGCTACTTCGGTTCTATTCCCACTGATATCAAAGAAGCTGGGATAAACCGGATAATGGTGGCTGAAAGGCAATGGAAACAGAGTCATGACAAAGAAGGAGATGTTGCTGACTATATCAGCTTCGAAGTTGAAGAAAGTTTTGATCAACCATATGTGCAGGAAACACCATATAACAATGATATTTGGGACATGCAATTGGAAAATCTTGATGAACTAATTACACCAGTTCTTATTTTGAAAAAGAATTTTATGGTTCAATCATCTTCACTCCAGTAG 2055 0.4 MAVVPECVIPKTSKDQSFNFSRSKPFTSAARVLKPRTWLRTGNNYPGSLSGSKPSSTTTPRNKLIPQMKGNTQNTLYIHKGNSLVRKVIPVSASTLMSVANQLPSLSSDNFQKSIRSECMVKVPGQSGALKTGVNGVKLELLKYSETYENQMGPDNGGAGQVEISSSNAKKLVYMKPKSNTLVASMNLSDLSVSADGKTQTAYSNGYYKKRKNQLIRTSFVSHISPTLTMQDSNVNSDGPLGSKEICSRCTKKWSQKVAGSLCKPLKAPLVWTLSSKHNIDSGHYGKILPQLFQWKRSTLRRRFIHNHDLSSNSTPSSANSKKLLLLGKRDTVYTRSTHRFSHQKPKALDAGGSILKGSKFTGRHSEKIHEEALAVAVLERKTREQKGLAAKGSIPRRLVIGKNVYFQIGKGNQLIRDPKKRTWILANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDDGKCSYIHDPSKVVFCTKFLNGLCSNGNCKLTHKVIPERMPDCSYFLQGLCTNRNCPYRHVNVNPKASLCGEFLKGYCADGNECRKKHSYVCPTFEAMGNCEEGTKCKLHHPKKQSKGKKRKRSEDENVGRARYFGSIPTDIKEAGINRIMVAERQWKQSHDKEGDVADYISFEVEESFDQPYVQETPYNNDIWDMQLENLDELITPVLILKKNFMVQSSSLQ 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30541g00005 684 FunFam zinc finger CCCH domain-containing protein 3 473 524 - -
Stsc30541g00005 684 Gene3D - 526 588 - -
Stsc30541g00005 684 ProSiteProfiles Zinc finger C3H1-type profile. 498 524 IPR000571 GO:0046872
Stsc30541g00005 684 MobiDBLite consensus disorder prediction 41 61 - -
Stsc30541g00005 684 FunFam Zinc finger CCCH domain-containing protein 7 526 587 - -
Stsc30541g00005 684 SMART c3hfinal6 498 523 IPR000571 GO:0046872
Stsc30541g00005 684 SMART c3hfinal6 472 496 IPR000571 GO:0046872
Stsc30541g00005 684 SMART c3hfinal6 552 574 IPR000571 GO:0046872
Stsc30541g00005 684 SMART c3hfinal6 443 471 IPR000571 GO:0046872
Stsc30541g00005 684 SMART c3hfinal6 525 551 IPR000571 GO:0046872
Stsc30541g00005 684 Gene3D - 470 525 - -
Stsc30541g00005 684 PANTHER CCCH ZINGC FINGER 10 675 - -
Stsc30541g00005 684 ProSiteProfiles Zinc finger C3H1-type profile. 525 552 IPR000571 GO:0046872
Stsc30541g00005 684 ProSiteProfiles Zinc finger C3H1-type profile. 443 472 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30541g00005 Stsc-Chr30541 34162 38356 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc30541g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30541g00005 - - ahf:114924304 1107.82