Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30541g00002 ATGCCACCTCGTCGGTTTGCGGCGGCCTCAGCGGCAGTGAACGAGGTCTCCGACATGGACAGCGATGGCTACGACGAAGAGGCGGGGGAGGAGGAGGAACCGTTCCCCGTGAAATGCCGTTCGTGCGATGAAGAGTACGAAGCTGATGACGCCAGAACATGCAAAGCTTGTTACGAAAATGCTAACGAGAATCAAGAGAAGCTCAAGCGTGAGATCGACGACCTCAAATCCAAGGTTTCCTTTCTCAAGCTTCCCTCACCCTCTCAGGATTCCATCACGTACGGACACAACGTTGGCGCCACCGACGTCGTTCTTGTTCCCTCCGGTGACCCCTCTGCTCCTGCTGGTGCTGGTGTTCCTGCTCATAGGGTTGTTCTGGCTATTCGCTCACCGGTTTTCAAAGGAATGCTTGAGAATGACATGAAGGAAAGCCGGAGCGGCACGATCAATGTCAGTGACATAAAATGCGACACCCTTCGTGAATTTGTCAACTACTTATACACTGCAGAAGCAACTCTGGATGACCACAAGGCACATGTCCTGTTAATGCTTGGAGAAAAATATCAGGTGAATCACCTGAAGGAACATTGTGAGAAGCATTTGATCTCTTCATTGAACTGGGACAATGCTATGCCGAACTACACCTTTGCATGTTCTTACAATGCCAAAATATTGCGAAAAGCATGCCTTAAAGAGCTCACAGCAAACATGGAGATGCTGAAAAAGAATGAGATGTATCCTGTGATGGTCCAGGCTCACCCTCAGCTTGTTGTGGATATATATGAATATTATCTTTCAAAGCAGCCTGATATTTTAGCATGCTTGGGGAGATTGTTCCTCAAAAATAGAGGCACCATCACTCTCGCACCCCAAAACCTCAGCTTCCAACCTGTTCTCCGTCTTGAACCTTGCAAGCCCAAAATCGAAGTCTTGAACCTTGCAAGACTGAAAGCGGAGAAGACAGGGCCGTTGTGGAAGCGGAGGAGCCTGGAAGTGAAGAGGAGCTCGTTGTGGAACTCGCGCTCCCCTTGGAGAGATGCAGAGGCAGGCAGCACCTCCACCGTGGGCAGCTCATTCCAGCGTCACCATCATGGGGATTGCAGTCATGCTAAATGTTATCTCTTGAAGCAATTCGACCAGCCACCAAATGGGTGGAGATTATCGGAGGGCCAACACTAG 1179 0.4996 MPPRRFAAASAAVNEVSDMDSDGYDEEAGEEEEPFPVKCRSCDEEYEADDARTCKACYENANENQEKLKREIDDLKSKVSFLKLPSPSQDSITYGHNVGATDVVLVPSGDPSAPAGAGVPAHRVVLAIRSPVFKGMLENDMKESRSGTINVSDIKCDTLREFVNYLYTAEATLDDHKAHVLLMLGEKYQVNHLKEHCEKHLISSLNWDNAMPNYTFACSYNAKILRKACLKELTANMEMLKKNEMYPVMVQAHPQLVVDIYEYYLSKQPDILACLGRLFLKNRGTITLAPQNLSFQPVLRLEPCKPKIEVLNLARLKAEKTGPLWKRRSLEVKRSSLWNSRSPWRDAEAGSTSTVGSSFQRHHHGDCSHAKCYLLKQFDQPPNGWRLSEGQH 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30541g00002 392 CDD BTB_POZ_ZBTB_KLHL-like 101 188 - -
Stsc30541g00002 392 MobiDBLite consensus disorder prediction 1 36 - -
Stsc30541g00002 392 Gene3D - 206 275 - -
Stsc30541g00002 392 SUPERFAMILY POZ domain 116 203 IPR011333 -
Stsc30541g00002 392 ProSiteProfiles BTB domain profile. 101 175 IPR000210 GO:0005515
Stsc30541g00002 392 PANTHER SPECKLE-TYPE POZ PROTEIN 77 268 - -
Stsc30541g00002 392 Gene3D Potassium Channel Kv1.1; Chain A 61 205 IPR011333 -
Stsc30541g00002 392 SMART BTB_4 101 205 IPR000210 GO:0005515
Stsc30541g00002 392 Pfam BTB/POZ domain 116 204 IPR000210 GO:0005515
Stsc30541g00002 392 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30541g00002 Stsc-Chr30541 9961 15081 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc30541g00002 BTB 1.5e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30541g00002 K10523 - gmx:100794118 257.684