Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30540g00001 ATGGAGCTTGCTGATGATGCTAAGAAGATTCAACAACAACAACATTTTCATGTGTTGGCAGTTGATGATAGTGTCATTGATAGGAAGCTCTTGGAGAGGCTCCTCAGAGATTCTTCATGCAAAGTTACCTGCGTGGAATCTGGTGACAAGGCTTTGAAATATCTTGGGCTTGTTAATGATGATGATAATAGTTCTTCTTCTTCATCAACCTCTTCAGAATCTTCATCATCTTCTAATTCTCCTCCTCAGCCATTATTACAGCAAGAGGGAATGAAAGTGAATTTGATCATGACGGATTATTGCATGCCTGGGATAAGTGGCTATGATTTACTTAAACGAGTCAAGGGATCTTCTTGGAAAGATGTTCCAGTTGTGATTATGTCATCAGAAAATGTACCTTCCAGAATCAGCATGTGTTTGGAAGGAGGGGCAGAAGAGTTTCTATTGAAACCTCTTCAATCAAAAGATTTAAAGAAGCTCCAATCCTACCTTGCCAAACCATCACTTGATCATAATAATTCAAGTGAAGAAGGAGAATCTGCTAATAATTTTATAGATTCAGAAAATGACAATAATCTCATCAGCAACAATAACAATATTATTAGCAATAATAGTAATAACAAAAGGAAGGCCATGTCTCCTGATGAGCCTCCAGAAAGATCAAGACCCAAAATGAAAGAGTTGAAAGTAGTGGTGTAA 699 0.3734 MELADDAKKIQQQQHFHVLAVDDSVIDRKLLERLLRDSSCKVTCVESGDKALKYLGLVNDDDNSSSSSSTSSESSSSSNSPPQPLLQQEGMKVNLIMTDYCMPGISGYDLLKRVKGSSWKDVPVVIMSSENVPSRISMCLEGGAEEFLLKPLQSKDLKKLQSYLAKPSLDHNNSSEEGESANNFIDSENDNNLISNNNNIISNNSNNKRKAMSPDEPPERSRPKMKELKVVV 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30540g00001 232 Gene3D - 17 213 - -
Stsc30540g00001 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 205 IPR045279 GO:0009736
Stsc30540g00001 232 MobiDBLite consensus disorder prediction 62 86 - -
Stsc30540g00001 232 ProSiteProfiles Response regulatory domain profile. 17 165 IPR001789 GO:0000160
Stsc30540g00001 232 SMART REC_2 16 161 IPR001789 GO:0000160
Stsc30540g00001 232 MobiDBLite consensus disorder prediction 168 232 - -
Stsc30540g00001 232 MobiDBLite consensus disorder prediction 212 232 - -
Stsc30540g00001 232 SUPERFAMILY CheY-like 16 163 IPR011006 -
Stsc30540g00001 232 MobiDBLite consensus disorder prediction 168 211 - -
Stsc30540g00001 232 Pfam Response regulator receiver domain 87 159 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30540g00001 Stsc-Chr30540 12096 15684 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30540g00001 10 224 Response Regulator Gene Family AT2G41310 45.887 3.59e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc30540g00001 Response_reg 8.7e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30540g00001 K14492 - gmx:100786187 266.544