Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30537g00001 ATGGAGTGCATGGTGGAGGGAGCGTTGAAGACGAGTTTTAGAAAAGAGATGAAATATAGCACATCCCCGCAGAGGTTCTTCATGGAGGAGCTCTCCCTTCAAAATGGCGCCCCTTCTGACGACTTCTTCGTTGACCAACTCCTTGACTTCTCCCACGTAGACCAACAAGGAGAAGAAGAAGAAGAACAAGAAGAAGAGCAACAGAAGAAGCAAGGTGGGGGTCCTGGAGAGCGTGGTTGCGAGTCAGTGTCACCGCAGCAGCAAGTGGAAGAGCCCTTTCCCGCTCTGCCCACCACAGACCTCAACCTTCCGGATGATGTGGCCGACTTGGAGTGGCTCTCCCATTTCGTGGAGGATTCATTCTCACCTCCCATGGTCCCCGCCGCCCTACCCACAAACTCCGCCAAACCCTCCACAACCCCCCTTCCCTGCTTCAACACCCCTGTTCCTGCCAAGGCACGCAGCAAGCGAACCCGCACCGGTCTCAGGGTTTGGCCACTCGCCTCTCCTTCCTTTGATTCCTCCTCCTCCTCAACCTCCTCTACCTCTTCCTCCCCTTCCAGCCCCTTGCTCACCATCGACCACCTTAGTTCCAACGCTCCGCCCAAGAAGCCCAAGAAGAAGCCCTCTCCGGAAGCTGCATTTCCGGCACAGGTGCCGCGCCGCTGCACCCATTGCGGCGTCCAGAAGACCCCACAGTGGAGAACGGGACCTCTCGGGGCCAAAACGCTCTGCAACGCCTGTGGGGTTCGCTACAAGTCGGGTCGCCTCTTACCCGAATATAGACCCGCTTGCAGCCCAACGTTCTCTAGCGACTTACACTCCAACCACCACCGGAAAGTTCTGGAAATGCGGCGAAAGAAGGAGAGCATAAGTGGTGGGGTTGACACCGCCGGTTTGGCCCCTCACCCGGTTGTTCCCAGTTTTTGA 930 0.5731 MECMVEGALKTSFRKEMKYSTSPQRFFMEELSLQNGAPSDDFFVDQLLDFSHVDQQGEEEEEQEEEQQKKQGGGPGERGCESVSPQQQVEEPFPALPTTDLNLPDDVADLEWLSHFVEDSFSPPMVPAALPTNSAKPSTTPLPCFNTPVPAKARSKRTRTGLRVWPLASPSFDSSSSSTSSTSSSPSSPLLTIDHLSSNAPPKKPKKKPSPEAAFPAQVPRRCTHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSDLHSNHHRKVLEMRRKKESISGGVDTAGLAPHPVVPSF 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30537g00001 309 SMART GATA_3 217 271 IPR000679 GO:0006355|GO:0043565
Stsc30537g00001 309 FunFam GATA transcription factor 214 297 - -
Stsc30537g00001 309 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 215 279 - -
Stsc30537g00001 309 ProSitePatterns GATA-type zinc finger domain. 223 248 IPR000679 GO:0006355|GO:0043565
Stsc30537g00001 309 Pfam GATA zinc finger 223 257 IPR000679 GO:0006355|GO:0043565
Stsc30537g00001 309 ProSiteProfiles GATA-type zinc finger domain profile. 217 253 IPR000679 GO:0006355|GO:0043565
Stsc30537g00001 309 MobiDBLite consensus disorder prediction 169 195 - -
Stsc30537g00001 309 CDD ZnF_GATA 222 270 IPR000679 GO:0006355|GO:0043565
Stsc30537g00001 309 PANTHER GATA TRANSCRIPTION FACTOR 30 292 - -
Stsc30537g00001 309 MobiDBLite consensus disorder prediction 48 102 - -
Stsc30537g00001 309 Gene3D - 216 291 IPR013088 GO:0006355|GO:0008270
Stsc30537g00001 309 PIRSF Txn_fac_GATA_plant 11 305 IPR016679 GO:0003677|GO:0005634|GO:0045893
Stsc30537g00001 309 MobiDBLite consensus disorder prediction 130 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30537g00001 Stsc-Chr30537 9740 11959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30537g00001 4 309 C2C2-Gata Transcription Factor Family AT5G66320 46.286 8.49e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc30537g00001 GATA 7.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30537g00001 - - aprc:113869559 312.383