Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30535g00005 ATGGCCACCGCGCAGGAGGAAGTAGTAGCAGCATCACAAGCGGAGAAGGGCAAGATGCGATGGTGGGAGCTTGAGGAGGATGACGCCGAGGACCTCGACTTCCTCCTGCCTCCCAAGCAGGTCATAGGTCCCGACGACAACGGAATCAAGAAGGTCATCGAGTACAAGTTCGACGACCAAGGCAACAAGATCAAGATCACCACCACCACCCGCGTCCGCAAGCTTGCCAACGCCCGCCTCAGTAAGCAGGCCGTCCTCCGCCGTCAATGGCCAAAGTTCGGCGACGCTGCTGACGAGGACGTCGGCAGCCGCCTTACCATGGTCTCCACTGAAGAGATCGTCCTTGAACGCCCCAAGCCTCTAGGTGCGAAATCAGAGGAGCCAAAGGCTACTGGAGATTCATTATCTCAAATCAACAAGGGTGCTGTTCTTATGGTGTGTAGGACTTGTGGGAAGAAGGGTGACCATTGGACCTCGCGGTGTCCATACAAGGATCTTGTGCAGCCAACAGAGGGATACGTTGATAGGCCTCCAGCGTCAGATGGCACGGCTCCTGCAGCCGGTTCGACCAAGGGAACGTATGTGCCTCCTGGTATGAGGGCGGGTGCCGAGAGGACCGGATCGGATATGCGGCAGCGTAGGAACGAGGAGAATTCCGTGAGGGTCACCAATCTCTCGGAGGACACCAGAGAGCCCGATTTGCTGGAGCTTTTCCGCCCGTTTGGCGCTGTGAGCAGAGTCTATGTTGCCATTGATCAAAAGACAGGCATAAGCAGGGGGTTTGGCTTTGTTAACTTTGTGAACAGGGAAGATGCACAAAGAGCTATCAACAAGCTGAATGGTTATGGCTACGACAATCTCATCCTAAGAGTTGAATGGGCAACCCCAAGGGCAAATTAG 900 0.5522 MATAQEEVVAASQAEKGKMRWWELEEDDAEDLDFLLPPKQVIGPDDNGIKKVIEYKFDDQGNKIKITTTTRVRKLANARLSKQAVLRRQWPKFGDAADEDVGSRLTMVSTEEIVLERPKPLGAKSEEPKATGDSLSQINKGAVLMVCRTCGKKGDHWTSRCPYKDLVQPTEGYVDRPPASDGTAPAAGSTKGTYVPPGMRAGAERTGSDMRQRRNEENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGISRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAN 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30535g00005 299 SUPERFAMILY RNA-binding domain, RBD 211 298 IPR035979 GO:0003676
Stsc30535g00005 299 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 18 298 IPR017334 GO:0003743|GO:0005737|GO:0005852
Stsc30535g00005 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 296 IPR000504 GO:0003723
Stsc30535g00005 299 FunFam Eukaryotic translation initiation factor 3 subunit G 182 299 - -
Stsc30535g00005 299 SMART rrm1_1 219 292 IPR000504 GO:0003723
Stsc30535g00005 299 MobiDBLite consensus disorder prediction 175 217 - -
Stsc30535g00005 299 PIRSF Transl_init_eIF-3_RNA-bind 10 299 IPR017334 GO:0003743|GO:0005737|GO:0005852
Stsc30535g00005 299 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 25 295 - -
Stsc30535g00005 299 Gene3D - 185 299 IPR012677 -
Stsc30535g00005 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 286 IPR000504 GO:0003723
Stsc30535g00005 299 CDD eIF3G 47 165 IPR024675 -
Stsc30535g00005 299 CDD RRM_eIF3G_like 219 294 IPR034240 -
Stsc30535g00005 299 Pfam Eukaryotic translation initiation factor 3 subunit G 40 166 IPR024675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30535g00005 Stsc-Chr30535 20237 22035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30535g00005 12 297 Eukaryotic Initiation Factors Gene Family AT3G11400 67.296 2.46e-151 425