Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30535g00001 ATGCCTCTTTCCAGCTGCTCCGATTGCGAACTCCTCTGCTGCGAGGACTCCTCTGGAGTCCTATCTGGTGAGGAGTCACAAGAATGCTCCTCCGAATCATCCTCATCGTCTTCTTCATCTTCTTCATTGTGGCCGTGTACGGAGGAATCAATCGCATGTTTCATGGAGCACGAACGCAACTTCGTCCCCGGATTGGAATACGTCACTAGGTTTCAGTCTCGCTCACTGGATGCTAACGCCAGAGAAGAATCTGTTGCATGGATACTCAAGGTTCAAGCGTACTATGGCTTTCAGCCTTTGACAGCATACCTGTCGGTTAATTACTTGGATCGATTTTTGGATTCTCGCCAGTTGCCGCAAACAAGTGGGTGGAGTCTTCAGCTTCTATCAGTTGCATGTTTGTCTTTAGCAGCAAAGATGGAGGAACCTCTTGTTCCCTCTCTCTTGGACCTTCAGGTGGAAGGAGCCAAATATATATTTGAGCCGCGAACAATACTTAGGATGGAGCTACTTGTTCTTAGTGTGTTGGATTGGAGGCTGAGATCAGTGACTCCACTCAGCTTCCTTGGTTTCTTTGCATGCAAAATTGATTCAGTTGGAACTTTTACTGCGTTCCTCATTTCTCGAGCTACAGAAATCATCTTATCTAATATCCAAGAGGCTAGCTTTCTTGCTTACAGGCCATCATGTATTGGTGCGGCAGCAATACTCTGTGCAGCTAATGAAATTCCTAATTGGTCTCTTGTTAAGCCTGAGAATGCCGAATCATGGTGCCAGGGACTAACAAAGGAAAAGATTATAGGGTGCTACCAGTTGATGCAAGAACTTGTGATTCACAGTAACCGGAGAAAGCTCCCTAATAATAATAAGTATTTGCCACAGATGCGAATGAGGTCGAGTACTGATACTACTGTTACATCATCATTCTCTTCTTCATTATGCTTTTCTTATAATAAAAGGAGAAAACTAAATGACTGTTTGGGGGTGAATCACGACGAAAAAGGAAACTCCCTGTGA 1017 0.4444 MPLSSCSDCELLCCEDSSGVLSGEESQECSSESSSSSSSSSSLWPCTEESIACFMEHERNFVPGLEYVTRFQSRSLDANAREESVAWILKVQAYYGFQPLTAYLSVNYLDRFLDSRQLPQTSGWSLQLLSVACLSLAAKMEEPLVPSLLDLQVEGAKYIFEPRTILRMELLVLSVLDWRLRSVTPLSFLGFFACKIDSVGTFTAFLISRATEIILSNIQEASFLAYRPSCIGAAAILCAANEIPNWSLVKPENAESWCQGLTKEKIIGCYQLMQELVIHSNRRKLPNNNKYLPQMRMRSSTDTTVTSSFSSSLCFSYNKRRKLNDCLGVNHDEKGNSL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30535g00001 338 SMART Cyclin_C_2 183 305 IPR004367 -
Stsc30535g00001 338 Gene3D - 64 181 - -
Stsc30535g00001 338 CDD CYCLIN_AtCycD-like_rpt2 183 273 - -
Stsc30535g00001 338 SUPERFAMILY Cyclin-like 184 301 IPR036915 -
Stsc30535g00001 338 Pfam Cyclin, C-terminal domain 183 301 IPR004367 -
Stsc30535g00001 338 SMART cyclin_7 86 174 IPR013763 -
Stsc30535g00001 338 SUPERFAMILY Cyclin-like 43 180 IPR036915 -
Stsc30535g00001 338 FunFam D2/4-type cyclin 64 181 - -
Stsc30535g00001 338 PANTHER CYCLINS 42 281 IPR039361 -
Stsc30535g00001 338 Gene3D - 54 244 - -
Stsc30535g00001 338 Pfam Cyclin, N-terminal domain 51 180 IPR006671 -
Stsc30535g00001 338 ProSitePatterns Cyclins signature. 81 112 IPR006671 -
Stsc30535g00001 338 CDD CYCLIN_AtCycD-like_rpt1 80 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30535g00001 Stsc-Chr30535 2743 5016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30535g00001 1 306 Core Cell Cycle Gene Families AT1G70210 62.013 3.65e-129 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30535g00001 K18810 - gmx:100818190 450.669