Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30532g00009 ATGGAGCACGCCGCACTAGATTCCATCCAATTCAGCGAGCAAATCCAGGGGCTCATGGCTCCGGCGCCGGAATCCACCAGCTCCTTCACGGCGCTCCTCGAGCTTCCGCCTCCGCAGGCCGTCAAGCTACTCCACTCGCCGGATAAGGCTCCTGCCGGTTCCGGAAAATCGCCCTGCCACGACAGCATCCCGAAACCCTACGCCTCCCTGATGAGCATCATCGACGGAACCCGCAAGCTCACGTTCCCTTCCAACGCCGAGCTGATCGAGCGCGCCGCGAGGTTCTCCGTTTTCGCCGGAGACGGACCGCCGGTGGCGGAGGTGAAAAACGAGCCGCCGGAGACCGATTCGAACCCTAGCTCGACTCAGTGCGATCCCGCGGTTGAGAACAAGGGCGCGAAGAGGAAGGAGCGAGAGAAGAAGGTTAAGGCGACGTCGAAGAAGAGCAAGAACGTCCCCGCCGCCGCCGAGAGTTCCGGTGACGGCGAGAAGCTTCCGTACGTTCACGTTCGCGTTCGTCGAGGTCAAGCCACCGATAGCCATAGCTTAGCAGAAAGGGCAAGGAGAGAGAAGATAAATGCTAGGATGAAACTTTTGCAAGAGCTGGTCCCCGGTTGCAATAAGATATCAGGCACAGCATTGGTTCTGGATGAAATCATCAACCATGTCCAATCTCTACAGCAACAAGTGGAGTTTTTATCAATGAAACTAGCAGCAGTTAACCCAAGAATTCACTTCAACCTTGACAGCATAATGCCTAATGAAGGGGCATCTCTAATGGACAGTGGCATTCCTAACATGGTTTCACCCCTCATGTGGCCGGAAATCCCAAACAATGGAAATAGAGAACAATATCAGCAACCATGGCAATTTGATGCATTCCACCAACCAGTTTGGGGAAGGGAAGAAGAAAACCCTAATTTCATGACTCCAGAAAACTCAATGTTGAGTTATGATTCATCAGCTAATTCAGTATCTCTGCACTCAAATCATTTGAAGATGGAGCTTTGA 1011 0.5282 MEHAALDSIQFSEQIQGLMAPAPESTSSFTALLELPPPQAVKLLHSPDKAPAGSGKSPCHDSIPKPYASLMSIIDGTRKLTFPSNAELIERAARFSVFAGDGPPVAEVKNEPPETDSNPSSTQCDPAVENKGAKRKEREKKVKATSKKSKNVPAAAESSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQQQVEFLSMKLAAVNPRIHFNLDSIMPNEGASLMDSGIPNMVSPLMWPEIPNNGNREQYQQPWQFDAFHQPVWGREEENPNFMTPENSMLSYDSSANSVSLHSNHLKMEL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30532g00009 336 Pfam Helix-loop-helix DNA-binding domain 180 227 IPR011598 GO:0046983
Stsc30532g00009 336 SMART finulus 182 232 IPR011598 GO:0046983
Stsc30532g00009 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 246 IPR036638 GO:0046983
Stsc30532g00009 336 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 84 320 IPR024097 GO:0006355
Stsc30532g00009 336 Coils Coil 216 236 - -
Stsc30532g00009 336 Gene3D - 173 247 IPR036638 GO:0046983
Stsc30532g00009 336 CDD bHLH_AtBPE_like 166 251 - -
Stsc30532g00009 336 MobiDBLite consensus disorder prediction 113 127 - -
Stsc30532g00009 336 MobiDBLite consensus disorder prediction 100 163 - -
Stsc30532g00009 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 226 IPR011598 GO:0046983
Stsc30532g00009 336 MobiDBLite consensus disorder prediction 42 62 - -
Stsc30532g00009 336 FunFam transcription factor bHLH48-like isoform X1 173 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30532g00009 Stsc-Chr30532 43046 49280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30532g00009 5 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 49.326 1.88e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30532g00009 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30532g00009 - - gmx:100799133 439.499