Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30528g00002 ATGACGAGCAGCCTCGCCCTCCACGCATCGTGCCGGCAACCTCCGACGACGATGCAGCAGCCTCGCCCTCCACGGTCCAAGCTCGCCGAGAGCGTCCACCGACAGCCTCCGCCATCCTCCGACCTCGTCAGATCCTATAAACCGGTCCGACCCCGGTTCCACTTCGGTCAGACCATTAAACCATTGAACCAGTCATTCTATCGGTTCAATGACCGGTCCGGTTCTCGCAACCTTTCTTTATGTAGCTATGACGCAGCGAATTTTGATCCCTTGGGCATTAACCTGGATTTATCTTCCCGGTTAAATCCTACTTGGGAGAATCTGGTCTCCTTGTTTTCACAGACTTTTGAGAGTACTTCAAGTACCGACAAGGAAAAACCGAATTCTTCTCGAGGAATAGCAGCTGCTATAGAGGATAGCTCAATTGATTTTGGTGACTTCTTTAAAGGTCCATTGCCAGGAAAGTTTCTCAAGCTTTTAGGGCTTCTTGCATTGTCACGTGTCGGTGTGTATATACCTCTAGGTGGGGTTAATAGGGAGGCTTTTGTTGGAAATTTAGATCAGAATAGTTTATTGAGCACTCTGGACTCGTTTTCTGGAGGAGGTATTGGTAGGCTTGGGATATGTTCCCTTGGTATTGTTCCCTTCATCAATGCACAAATTGTTTTCCAGCTTCTTGCACAAGTATATCCTAAGTTGCAAGATCTTCAGAAAAGAGAAGGTGAGGCTGGAAGAAAGAAAGTTCTTCAATACACTCGATATGCATCAGTTGGATTTGCAATTGTACAGGCAATTGGCCAAGTCCTCTTCCTACGTCCTTATGTGAACGACTTTAGTACCGAGTGGGTTCTTTCATCTGTTATCTTGTTGACTCTTGGCTCTTTGTTTACAACATACATCGGCGAACGAATCACAGACCTAAAACTTGGCAATGGCACATCTCTTTTGATATTTACAAACATTATCTCCTACTTGCCAGCTTCTTTTGGTCGGACAATTTCCCAGGCATTTAATGATACTAATTACATTGGACTTGTTACCATCATTGTGTCCTTTTTTCTGTTGGTAGTTGGTATTGTCTACGTTCAGGAAGCAGAGAGAAAAATTCCTCTTAACTATGCTTCAAGATTCACTAGCAAAAGCAGAGGACTTGAAAAATCAGCCTACTTACCCTTTAAGGTAAATAGTTCTGGGGTAATGCCCATCATATTCTCTACATCATCATTAGCTCTTCCTGGTACCTTAGCACGCTTCACTGGTTTGACTGCATTGAAGAACGCTGCAGTAGCTTTGAACCCCGGGGGTTCTTAG 1311 0.4462 MTSSLALHASCRQPPTTMQQPRPPRSKLAESVHRQPPPSSDLVRSYKPVRPRFHFGQTIKPLNQSFYRFNDRSGSRNLSLCSYDAANFDPLGINLDLSSRLNPTWENLVSLFSQTFESTSSTDKEKPNSSRGIAAAIEDSSIDFGDFFKGPLPGKFLKLLGLLALSRVGVYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLFLRPYVNDFSTEWVLSSVILLTLGSLFTTYIGERITDLKLGNGTSLLIFTNIISYLPASFGRTISQAFNDTNYIGLVTIIVSFFLLVVGIVYVQEAERKIPLNYASRFTSKSRGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLTALKNAAVALNPGGS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30528g00002 436 MobiDBLite consensus disorder prediction 1 42 - -
Stsc30528g00002 436 ProSitePatterns Protein secY signature 2. 299 316 IPR030659 -
Stsc30528g00002 436 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 148 431 IPR002208 GO:0015031|GO:0016020
Stsc30528g00002 436 Pfam SecY 208 421 IPR002208 GO:0015031|GO:0016020
Stsc30528g00002 436 MobiDBLite consensus disorder prediction 1 16 - -
Stsc30528g00002 436 PRINTS Preprotein translocase SecY subunit signature 156 174 - -
Stsc30528g00002 436 PRINTS Preprotein translocase SecY subunit signature 280 305 - -
Stsc30528g00002 436 PRINTS Preprotein translocase SecY subunit signature 206 226 - -
Stsc30528g00002 436 PRINTS Preprotein translocase SecY subunit signature 248 271 - -
Stsc30528g00002 436 PRINTS Preprotein translocase SecY subunit signature 306 329 - -
Stsc30528g00002 436 PRINTS Preprotein translocase SecY subunit signature 397 416 - -
Stsc30528g00002 436 Gene3D SecY subunit domain 147 435 IPR023201 -
Stsc30528g00002 436 SUPERFAMILY Preprotein translocase SecY subunit 148 428 IPR023201 -
Stsc30528g00002 436 ProSitePatterns Protein secY signature 1. 207 226 IPR030659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30528g00002 Stsc-Chr30528 12794 18664 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30528g00002 68 436 Chloroplast and Mitochondria Gene Families AT2G18710 79.625 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30528g00002 K10956 - gmx:100810430 602.438