Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30526g00009 ATGCCAATAAGATATTCATATAAAGAGATAAAGAAGATGACCAGAGGTTTCAAGGAAAAGCTTGGAGAAGGAGGATTTGGTGCAGTCTACAAAGGAAAACTACGAAGTGGACCTTTTGTAGCCATAAAATTACTGGGTAAAGCTAAAGCTAATGGCCAAGAATTCATCAGTGAAGTTGCTACCATTGGTAGAATACACCATGCCAACGTGGTAAGGCTGATTGGATTTTGTGTGGAGGGTTCAAAACGTGCTCTTATATATGAATTCATGCCGAATGGTTCTCTAGATAAGTATACATTTTCCAAAGAAAAAAGTGCATCTCTAACTTCCGAAAAGATGTTTGAGATATCTTTGGGAGTGGCACGAGGTATGGCTTATTTGCATGAAGGCTGTGACATGCAGATTTTGCATTTTGATATCAAACCTCACAATATTCTTCTTGATGAGAACTTCATTCCAAAGGTCTCAGATTTTGGTCTTGCAAAGCTATATCCTCTTGATAATAGTAATGTAAGTTTGACTGTGGCAAGAGGAACAATTGGTTATATGGCTCCAGAACTGTTCTATCAGAATATTGGAGCAGTATCTTACAAGGCTGATGTTTATAGCTTTGGAATGCTTCTGATGGAAATGGCGAGTCAGAGAAGAAATATGAATCCACAAGCAGAGCATTCAAGCCAACTTTACTTTCCATATTGGATCTATGATCAATTGGCTGCAAAGGAAAATGATGAGATAGAGATGGAAAGTTTTGATCATGAAGAAAGGAGTGAACTAGCAAAAAAGATGTTTATGACTGCATTATGGTGTATACAACTGAAGCCAAGTGATCGTCCTTCAATGAATAAAGTAGTGGAAATGTTACAAGGAGATGTCGCAAGCATTGAGATGCCTCCAAAGCCTTCATTTTATCCAAATGATGTGATTCAAAGGGATTCCAATGTTGAGTCATCAGGAGTAAATGATTCAAATAATTCTGATGTCACTGCAAGTTTTGAGGAGGAAAGTACAACCAACCCCTCGTTAAAGTTTTCTAGTTGA 1041 0.3775 MPIRYSYKEIKKMTRGFKEKLGEGGFGAVYKGKLRSGPFVAIKLLGKAKANGQEFISEVATIGRIHHANVVRLIGFCVEGSKRALIYEFMPNGSLDKYTFSKEKSASLTSEKMFEISLGVARGMAYLHEGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPLDNSNVSLTVARGTIGYMAPELFYQNIGAVSYKADVYSFGMLLMEMASQRRNMNPQAEHSSQLYFPYWIYDQLAAKENDEIEMESFDHEERSELAKKMFMTALWCIQLKPSDRPSMNKVVEMLQGDVASIEMPPKPSFYPNDVIQRDSNVESSGVNDSNNSDVTASFEEESTTNPSLKFSS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30526g00009 346 SUPERFAMILY Protein kinase-like (PK-like) 3 288 IPR011009 -
Stsc30526g00009 346 Gene3D Transferase(Phosphotransferase) domain 1 90 302 - -
Stsc30526g00009 346 PIRSF TyrPK_CSF1-R 90 345 - -
Stsc30526g00009 346 PIRSF TyrPK_CSF1-R 16 102 - -
Stsc30526g00009 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Stsc30526g00009 346 MobiDBLite consensus disorder prediction 298 346 - -
Stsc30526g00009 346 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Stsc30526g00009 346 FunFam PR5-like receptor kinase 90 300 - -
Stsc30526g00009 346 Pfam Protein kinase domain 18 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30526g00009 346 ProSiteProfiles Protein kinase domain profile. 15 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30526g00009 346 MobiDBLite consensus disorder prediction 307 346 - -
Stsc30526g00009 346 FunFam serine/threonine-protein kinase PBS1-like 1 89 - -
Stsc30526g00009 346 SMART serkin_6 15 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30526g00009 346 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Stsc30526g00009 346 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 309 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30526g00009 Stsc-Chr30526 52484 53527 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30526g00009 4 304 Receptor kinase-like Gene Family AT5G38280 50.329 1.26e-105 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc30526g00009 Pkinase 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30526g00009 - - adu:110273082 561.607