Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30526g00008 ATGGCAGAACTGTTGCTCCTGCTGCTGCTTCTGAGTTTGAATCTCATTAACATTGGAATTTGCCACGATGATCCTGTTCAATGTCCGGTCCGTGTGTACTGTAAAAAAAACGAATCCAATATTCTTGAGCTCCCCGGTGTTCCATCCTCTGTAAAACTTCCCGTATGTAGGATTAATTTCAAATCAACAACCTTAGAAGTGAATGCTGTCGGAATTTGCTTGACAGAACTCTTTCTGAGGCTCAATTATTCATCATTCTATCCTTTCCAATCCATAGGAACAAATTTTGATTTCGCTGGTACTAGTTATGATCACGGCTATTCACTTGAACCAAGAAACATTACTTTCTTTCGTTGCCCTTCATTCACAGAAGATTGCCGGATTGAAGTGGCTGAGGATGACGATGGCATCATCGACTTGGACCTGGTATACTGCACTAAACTGTCTCGTCAGATTTTGCCAATACCAGCAACTTTTATACGGGATAGTTCATTCTACTTGGTATGGTCCAAAACTAATTTGGGTAGTGGATGCTTTGTTGGTTGCAACATATCCAACAAGGAGGTGACTCAATCCAACAAGGGGACTCAAACTAATTACTATGAATCAACTCTTTTACCCGTTACAGGTACAGTTATCCTTTGGTTTATCCCGATTGCCCTGTACTCTATATATTGCTATCATAGAGACAAAGGGGAAGATCAACAAAGAGTTGAAAATTTTCTGAAGGACTACCAGGCATTAAACCCGACAAGATTCTCTCATGCTGATATCAAGAGAATCACAAGGCAATTCAAGGACAAATTAGGTGAAGGAGCTCACGGAATCATATACAAAGGTAAACTGTCCAATCAAATCCTTGTTGCTGTCAAGATTCTTACTACCACAGAAGGAGATGGGAAAGAATTCATAAATGAAGTGGGAACTATGGCTAAAATCCATCATGTCAATGTGGTTCGCTTGCTTGGCTACTGCGCTGACGGATCTCACCGTGCTTTAGTTTATCACTTCTTCCCCAAAGGTAATCTGCAAAGCTTCATTTCTTTACCAAGCAACAAGGAAAGCTTCCTTGGATGGAACAAGATGCATCGGATTGCTCTGGGCATAGCCAAAGGGATTGAATATCTTCACCAAGGTTGTGATCAAAGAATTCTGCATTTTGACATTAATCCTCGCAATGTCTTGTTAGATGAAAGTTTCACTCCAAAAATCTCTGACTTTGGTTTGGCTAAGTTATGCCGAAAGAGTCGAAGTACAGTGTCCATGACTGCAGCTAGGGGAACATTAGGGTACATGGCGCCTGAAGTTTTCTCTAGAAATTTTGGCAATGTATCTTACAAATCTGATATCTACAGTTATGGTATGTTATTGCTTGAGATGGTTGGAGGAAGAAAAAATACAAATGCAAGTGAAGAAACTTTTCAAGTTCTATATCCAAATTGGATACATAGTTTGCTCGAAGGAGATGACACGTATATTCCAATTGACGATGATGGAGATTTTAGAATTGCAAAGAAACTTGCGATAGTGGGACTATGGTGCATCCAGTGGCACCCTGTGCACCGTCCCTCCATGAAAAGTGTAGTTCAAATGCTCGAAGGAGGAGAAGAACAACTGAAAGTGCCGCCGAATCCTTTTGAATCTGCAGCTGCAAGTAGCTCAAGTGCAATTATTCCAGCGAGATGCTTGAATTTGGAATTGGAAGTGATTCCAGAAACAGATTAG 1725 0.4075 MAELLLLLLLLSLNLINIGICHDDPVQCPVRVYCKKNESNILELPGVPSSVKLPVCRINFKSTTLEVNAVGICLTELFLRLNYSSFYPFQSIGTNFDFAGTSYDHGYSLEPRNITFFRCPSFTEDCRIEVAEDDDGIIDLDLVYCTKLSRQILPIPATFIRDSSFYLVWSKTNLGSGCFVGCNISNKEVTQSNKGTQTNYYESTLLPVTGTVILWFIPIALYSIYCYHRDKGEDQQRVENFLKDYQALNPTRFSHADIKRITRQFKDKLGEGAHGIIYKGKLSNQILVAVKILTTTEGDGKEFINEVGTMAKIHHVNVVRLLGYCADGSHRALVYHFFPKGNLQSFISLPSNKESFLGWNKMHRIALGIAKGIEYLHQGCDQRILHFDINPRNVLLDESFTPKISDFGLAKLCRKSRSTVSMTAARGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNASEETFQVLYPNWIHSLLEGDDTYIPIDDDGDFRIAKKLAIVGLWCIQWHPVHRPSMKSVVQMLEGGEEQLKVPPNPFESAAASSSSAIIPARCLNLELEVIPETD 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30526g00008 574 FunFam PR5-like receptor kinase 338 544 - -
Stsc30526g00008 574 SUPERFAMILY Protein kinase-like (PK-like) 243 533 IPR011009 -
Stsc30526g00008 574 ProSitePatterns Protein kinases ATP-binding region signature. 269 291 IPR017441 GO:0005524
Stsc30526g00008 574 Pfam Protein tyrosine and serine/threonine kinase 265 531 IPR001245 GO:0004672|GO:0006468
Stsc30526g00008 574 PANTHER RUST RESISTANCE KINASE LR10-RELATED 234 550 IPR045874 GO:0004672
Stsc30526g00008 574 FunFam serine/threonine-protein kinase PBS1-like 230 337 - -
Stsc30526g00008 574 Gene3D Transferase(Phosphotransferase) domain 1 338 544 - -
Stsc30526g00008 574 Gene3D Phosphorylase Kinase; domain 1 236 337 - -
Stsc30526g00008 574 ProSiteProfiles Protein kinase domain profile. 263 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30526g00008 Stsc-Chr30526 37599 39472 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30526g00008 225 545 Receptor kinase-like Gene Family AT1G66980 48.328 1.06e-100 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc30526g00008 PK_Tyr_Ser-Thr 5.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30526g00008 - - adu:107495716 803.127