Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30526g00006 ATGATTGATTCCCATGGTTTTCGAGATCCGACGGAGCCAATGAACTTTACTTTCTTTGATTGCTATTCTAGTGTGTCAGCAAATCAGTTATCTTGCCCGATTAGCATTGCTGCTGATGACGATGATGTGGTGGAGTCCAACCTTGTATTCTGCAAAGAGTTGACTCGTCATGTCTTGCCAATTCCCGACTGTGAGGCATTGAACCCAACAAGATTCTCTTATGCTTATATCAAGAGAATCACAAAGCAATTTAAGGACAAGTTAGGTGTGGGAGCTCATGGAGCTGTCTACAAAGGTAAATTGTCCAATCATATTATTGTTGCTGTCAAGATTCTCAATACCACTGAAGGAGATGGGAAAGAGTTCATAAATGAAGTTGGAACTATGGCTAAAATCCACCATGTCAATGTGGTTCGCTTGCTTGGTTACTGCGCCGACGGATCTCACCGCGCTTTAGTTTATCACTTCTTCCCCAAAGGCAATCTACGGAGCTTCATTTCTCCGTCGTCGAGGGACAAAGAAAGCTTTCTCGGATGGAACAAGTTGCATCAGATTGCTCTGGGCATAGCCAAAGGGATTGAATATCTTCACCAAGGTTGTGATCAAAGAATTCTGCATTTCGACATTAATCCTCGCAATGTCTTGTTAGATGAAAGTATCACCCCAAAAATCTCTGTCTTCGGTTTGGCGAAGTTATGCTCCAAGAATCGAAGTACAGTGTCCATGACTGCAGCCTGGGGAACTTTAGGTTACATGGCACCAGAAGTTTTTTCTAGAAACTTCGGCAATGTTTCTTATAAATCTGATATCTACAGTTACGGAATGTTACTGCTTGAGATGGTTGGAGGAAGAAAAAATACAAATGCTAGTGAAGAAAGTTTACAAGTTCTGTATCCGGATTGGATACACAATTTGCTTGAAGGAAATGATACATATATTCCAATTGAGGATGATGGAGATTTTTAG 966 0.412 MIDSHGFRDPTEPMNFTFFDCYSSVSANQLSCPISIAADDDDVVESNLVFCKELTRHVLPIPDCEALNPTRFSYAYIKRITKQFKDKLGVGAHGAVYKGKLSNHIIVAVKILNTTEGDGKEFINEVGTMAKIHHVNVVRLLGYCADGSHRALVYHFFPKGNLRSFISPSSRDKESFLGWNKLHQIALGIAKGIEYLHQGCDQRILHFDINPRNVLLDESITPKISVFGLAKLCSKNRSTVSMTAAWGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNASEESLQVLYPDWIHNLLEGNDTYIPIEDDGDF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30526g00006 321 ProSitePatterns Protein kinases ATP-binding region signature. 88 110 IPR017441 GO:0005524
Stsc30526g00006 321 FunFam serine/threonine-protein kinase PBS1-like 56 156 - -
Stsc30526g00006 321 SUPERFAMILY Protein kinase-like (PK-like) 67 304 IPR011009 -
Stsc30526g00006 321 FunFam Os07g0541700 protein 161 248 - -
Stsc30526g00006 321 Pfam Protein tyrosine and serine/threonine kinase 84 285 IPR001245 GO:0004672|GO:0006468
Stsc30526g00006 321 Gene3D Transferase(Phosphotransferase) domain 1 157 317 - -
Stsc30526g00006 321 Gene3D Phosphorylase Kinase; domain 1 60 156 - -
Stsc30526g00006 321 ProSiteProfiles Protein kinase domain profile. 82 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30526g00006 321 PANTHER RUST RESISTANCE KINASE LR10-RELATED 67 309 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30526g00006 Stsc-Chr30526 18388 21042 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30526g00006 71 317 Receptor kinase-like Gene Family AT4G18250 47.826 1.90e-79 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc30526g00006 PK_Tyr_Ser-Thr 6.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30526g00006 - - ahf:112805998 517.309