Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30526g00001 ATGGCCGGGCTACTCGACGGGGGCTCGTGGCTCGGCTCGTCTCAGGCTCGACTAGTTTCATTAAATAAGTCAGGATTAGGATTTCTCAAAGTGTTAGGCAAAGATACTGGCGAGGACTTGTCTAAAGATGATGTATTACCTGCCATTAAGGTAGGAGGGTACATAGGAAGGTTTATGATACCTTACATATTAATCAAATATACATTGGGTGTTATCTTTTTCTTTGCATTGTTGATCTACACACTTCGAAGAAGGCATCTATCAATTTATGGCAATATTGAAGAGTTTTTGCAACACAACACCCTCATGCCAATAAGATATTCATATAAGGAGATCAAGAACATGACTCAAGGTTTTAAGGAAAAGTTAGGAGAAGGAGGATTCGGTGCAGTTTACAAAGGGAAGCTAATAAGCGGGCCCTTTGTAGCCATAAAAATGTTGGGTAAAGCCAAAGGAGGTAATGGCCAAGATTTCATCAGTGAAGTTGCTACAATCGGAAGAATACACCATGCTAATGTGGTAAGGCTGATTGGATTTTGTGTCGAGGGTTTAAAACGTGCTCTTATATATGAATTCATGCCGAATGGTTCTCTCGATAAATATATATTTTCTAAAGAAAAAAATGTATCTCTAACTTCCGAAAAGATGTTTGAGATATCTGTGGGGGTGGCACGAGGTATGGCTTATTTGCATGAAGGCTGTGACATGCAGATTTTGCATTTTGATATTAAGCCTCACAACATACTTCTTGATGAGAACTTCATTCCAAAGGTCTCAGACTTTGGTCTTGCAAAGCTTTATCCTCTTGATAATAGTATTGTAAGTTTGACTGCGGCAAGAGGAACAATTGGTTACATGGCTCCTGAATTGTTCTATCAAAATATTGGAGCAGTGTCTTACAAGGCTGATGTCTATAGTTTTGGAATGCTTTTGATGGAAATGGCGAGTCAGAGAAGAAATTTGAATCCACATGCAGAGCATTCAAGCCAACTTTACTTTCCATTTTGGATTTATGATCAGTTGGCTGTTGAGGAAAATGATGAGATAGAGATGGTAAGTTTTAATGACGAAGAAAGGAGTGAACTAACAAGAAAGATGTTTGTGACTGCATTATGGTGTATACAATTGAATCCAAGTGATCGTCCCTCAATGAACAAAGTAGTGGAAATGTTGGAAGGAGATGTTGCAAGCATTGAAATACCTCCAAGGCCTTCATTTTATCCAAATGATGTGATTCAAAGCGATTCCAATATTGGCTCATCAGGAATAAATGATTCAGATAATTTTGATGTCTCTTCAAGTTTTGAGGAGGAAAGTACAACCAACCCCTTGTTTTAG 1338 0.3849 MAGLLDGGSWLGSSQARLVSLNKSGLGFLKVLGKDTGEDLSKDDVLPAIKVGGYIGRFMIPYILIKYTLGVIFFFALLIYTLRRRHLSIYGNIEEFLQHNTLMPIRYSYKEIKNMTQGFKEKLGEGGFGAVYKGKLISGPFVAIKMLGKAKGGNGQDFISEVATIGRIHHANVVRLIGFCVEGLKRALIYEFMPNGSLDKYIFSKEKNVSLTSEKMFEISVGVARGMAYLHEGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPLDNSIVSLTAARGTIGYMAPELFYQNIGAVSYKADVYSFGMLLMEMASQRRNLNPHAEHSSQLYFPFWIYDQLAVEENDEIEMVSFNDEERSELTRKMFVTALWCIQLNPSDRPSMNKVVEMLEGDVASIEIPPRPSFYPNDVIQSDSNIGSSGINDSDNFDVSSSFEEESTTNPLF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30526g00001 445 SMART serkin_6 119 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30526g00001 445 FunFam serine/threonine-protein kinase PBS1-like 90 192 - -
Stsc30526g00001 445 Gene3D Transferase(Phosphotransferase) domain 1 193 403 - -
Stsc30526g00001 445 ProSiteProfiles Protein kinase domain profile. 117 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30526g00001 445 Gene3D Phosphorylase Kinase; domain 1 92 192 - -
Stsc30526g00001 445 FunFam PR5-like receptor kinase 193 402 - -
Stsc30526g00001 445 SUPERFAMILY Protein kinase-like (PK-like) 101 392 IPR011009 -
Stsc30526g00001 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Stsc30526g00001 445 ProSitePatterns Protein kinases ATP-binding region signature. 123 145 IPR017441 GO:0005524
Stsc30526g00001 445 PANTHER RUST RESISTANCE KINASE LR10-RELATED 88 412 IPR045874 GO:0004672
Stsc30526g00001 445 Pfam Protein kinase domain 120 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30526g00001 Stsc-Chr30526 519 2480 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30526g00001 106 435 Receptor kinase-like Gene Family AT5G38280 48.949 7.11e-104 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc30526g00001 Pkinase 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30526g00001 - - adu:110273082 628.632