Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30525g00009 ATGGGGAATCATGGCGGAGAGAACGGTAGTAATGGCGAGGTAATAAAGAAGGGGAAGGACGAGGTGGACGCCTTGAGATGGAAGGAGGCGGCGGAGGGATTGAAGGGAAGCCATTTTGAGGAGGTGAGGGGGATGGTCGGGGACTATAGGAAGGCGGTGGTGAGGGTGGGAGGGGAGAGGCTGAGAATTGCTGAGGTGGCAGCGGTGGCGGTTGGGAGAGGGAAGGTGGCGGTGGAGTTGGAGGAGGAGGCGAGGAAGGGAGTGGATGCAAGCAGTGAGTGGGTGATGGATAGCATGCGGAGAGGGATAGACTGTTACGGTGTGACCACAGGGTTTGGTGCAACCTCACACCGGAGAACTACACAAGCTGTTGCCCTCCAAACTGAGCTCATTAGGTTTCTGAATGCTGGAATATTTGGGAATGACAGAGAATCATGTCACACCCTGCCACAAAGTGCAACAAGGGCTGCAATGCTGGTCCGAATCAACACACTCCTTCAAGGCTACTCTGGCATTAGATATGAGATCCTAGAAGCCATTGCAAAGCTACTCAACCATGGCATCACCCCAGTGGTTCCATTGCGAGGCTCAATTTCTGCCTCTGGAGACTTGGTTCCCTTCTCATACATAGCAGGACTACTCACAGGGAGGCCTAATTCAAAGGCCCTTGGTCCAGATGGTGACACCCTCACCGCGGAGCAAGCCTTCGATCTAGCCGGCATTGGTACCGAATTCTTCGAGTTGCAGCCTAAGGAGGGTCTTGCACTTGTCAATGGAACTGGTGTTGGTGCTGGTTTGGCTTCAATGGTCTTATTTGAGGCCAACATCTTAACCATCTTATCTGAAATCATGTCTGCAATTTTTGCAGAAGTGATGCAGGGTAGGCCAGAGTTTACCGATCATTTGACTCACAAGTTGAAGCATCACCCTGGTCAGATTGAAGCAGCAGCACTAATGGAACATATCTTGAGTGGAAGTGCTTATGTTAAATCAGCACAGAAGTTGCATGACATTGAGCCTTTTCAAAAGCCAAAGCAAGATAGATATGCTCTTAGGACTTCGCCACAGTGGTTAGGACCACAAATTGAAGTGATTCGTTTGTCAACCAAGTCCATTGAAAGAGAGATCAACTCTGTGAATGACAATCCCTTGATCGATGTTTCGAGGAACAAGGCATTGCACGGTGGCAATTTTCAAGGTACACCGGTTGGTGTTTCAATGGACAATACAAGGCTAGCATTGGCTGCAATTGGAAAACTCATCTTTGCTCAAATGTCTGAGTTGGTCAATGAGTTCTACAACAATGGTTTACCTTCAAATCTCTCTGGGGGACAATGTCCTAGCTTGGATTATGGATTCAAGGGTGCCGAGATAGCGATGGCTGCATATTGTTCTGAGCTTCAGTATCTTGCAAACCCCGTGACAAATCATGTGCAAAGCGCGGAACAACACAACCAGGATGTGAATTCATTGGGGCTGATCTCAGCTAGGAAAACAGCTGAAGCTGTTGAGATATTAAAGCTCATGTTTTCAACCTACTTGGTTGCTCTTTGTCAGGCTATAGATTTGAGGCATTTGGAGGATAACATGAAGATCACAGTTAAGAACACAGTGAGCCGAGTAGCTAAGAAAGTCCTCACTAGTGTCAATGGGGATCTTCATCCTCATCCTTCCAAATCTTGTGAGAAAGATTTGCTCAAAGTGGTTGATTGCGAGCATGTCTTCACCTACATAGATGACCCCTGTAATCCTGCATACCCTTTGATGCAGAAACTGAGGCTAGTGCTTGTGGAACATGCATTGATGAAGAGTAGCAATGGCTTGAAAAGCACAAACGCTATCATCTTCGCAAAGATCAGCGCTTTCGAGGAGGAGCTCAAGAGGGTGCTGCCCAAAGAAGTTGAGGCTACAAGGGATGCTTTTGAGGAAGGGAATGCAGCAAGTCCTAACAAAATCAAGGAGTGCAGATCCTATCCAATGTACAAGTTTGTGAGGGAGGAAGTGGGAACAGAGTTTCTAACAGGAAAGAAGAATAAATCCCCTGGTGAAGATTTTGATAAAGTTTTCAATGCAATTAATCAGGGTAAGATAATAGACCCAATCTTTGAATGCCTCAAGGACTGGGATTGCACTCCTCTTCCCATATGTTGGAGCTCCTGA 2160 0.4722 MGNHGGENGSNGEVIKKGKDEVDALRWKEAAEGLKGSHFEEVRGMVGDYRKAVVRVGGERLRIAEVAAVAVGRGKVAVELEEEARKGVDASSEWVMDSMRRGIDCYGVTTGFGATSHRRTTQAVALQTELIRFLNAGIFGNDRESCHTLPQSATRAAMLVRINTLLQGYSGIRYEILEAIAKLLNHGITPVVPLRGSISASGDLVPFSYIAGLLTGRPNSKALGPDGDTLTAEQAFDLAGIGTEFFELQPKEGLALVNGTGVGAGLASMVLFEANILTILSEIMSAIFAEVMQGRPEFTDHLTHKLKHHPGQIEAAALMEHILSGSAYVKSAQKLHDIEPFQKPKQDRYALRTSPQWLGPQIEVIRLSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPVGVSMDNTRLALAAIGKLIFAQMSELVNEFYNNGLPSNLSGGQCPSLDYGFKGAEIAMAAYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVEILKLMFSTYLVALCQAIDLRHLEDNMKITVKNTVSRVAKKVLTSVNGDLHPHPSKSCEKDLLKVVDCEHVFTYIDDPCNPAYPLMQKLRLVLVEHALMKSSNGLKSTNAIIFAKISAFEEELKRVLPKEVEATRDAFEEGNAASPNKIKECRSYPMYKFVREEVGTEFLTGKKNKSPGEDFDKVFNAINQGKIIDPIFECLKDWDCTPLPICWSS 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30525g00009 719 FunFam Phenylalanine ammonia-lyase 14 260 - -
Stsc30525g00009 719 Gene3D - 527 650 IPR023144 -
Stsc30525g00009 719 NCBIfam phenylalanine ammonia-lyase 24 706 IPR005922 GO:0005737|GO:0006559|GO:0016841
Stsc30525g00009 719 FunFam Phenylalanine ammonia-lyase 261 575 - -
Stsc30525g00009 719 CDD PAL-HAL 61 524 IPR001106 -
Stsc30525g00009 719 Gene3D Fumarase/aspartase (Central domain) 262 709 - -
Stsc30525g00009 719 Gene3D - 15 260 IPR024083 -
Stsc30525g00009 719 PANTHER HISTIDINE AMMONIA-LYASE 22 716 IPR001106 -
Stsc30525g00009 719 Pfam Aromatic amino acid lyase 61 528 IPR001106 -
Stsc30525g00009 719 SUPERFAMILY L-aspartase-like 23 716 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30525g00009 Stsc-Chr30525 42820 45608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30525g00009 9 716 Monolignol Biosynthesis Gene Families AT3G53260 72.996 0.0 1094
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30525g00009 K10775 - vvi:100241575 1076.62