Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30525g00008 ATGTCCAATAAGGATGCGAAACCGAACATGCCTAGTCCTGTGAGGAGATCTGGAAGAAATAGGAGTAACTCTTCTATAAGTCCTTCAAATTCTGAAAGCTCAGGGTCAATGAATTCAAAACAGAAGCCAAAAAAAGAAAAGAGCGTGAAACAGTTGACATTTGAAGCTAAGGAAGTCAATGAAAATGAAGAGCACGATTTGGGAAGTTCGCACTTAGAACCAAAGAGAAGGGATGCTCGTTGGTACCGGTCTCTATTTCGAAAACCAAAAAATGGTTGCCTTACGCAGTCAAAGAAGATTGACCAGTCTTTTAAAGAGATTCACTTAAATTGTAAGGAAGCCTCCAAGAATGGTACACTACCTTCTCAAGTTGATTCCAAGTTGGCCGGGACTGTGAAAAATCTAGTAGATCCGAAAGTAGGGTTGCTGGTGCCATCTAATGGCACAAACTCTGAGACTAACGAGGTGCCTCAAAGGGCTCAACCTGATACCTGTGGAAATGGGACAGTGCAATTGCCAGAGTCAAGGAATTCCTTACTGGATGAAGATTTAGTTAGGAACGATATTGGGCATGATGATGTAGCAACTGGTGGATCATGTTCCAAACGGAGAAGGTTGGATTGTGATCCAATGATCTCATCTAACCCCTCTACAACTGAGGATGCAGCTGATACTGATCCAAGCATGTTGCAAAAGGAATATCCTGTAAATTCACCAAAAGAAGTCATAAAACACACATGTCTAATTTGCAAGAAGGGAGGACAGCTACTGTTTTGTGGTGGAAAAGGATGCAGTGGGTGCTACCATTCTTCTTGTCTTGAGCCACCCCTGGTCGATGCCTCCGTTGGAGTTTGGCATTGCCATTTCTGTGTGAGGAAGAAGATTGAATTTGGTGTATATTCTGTATCAGAGGGAGTAGAATCAATTTGGGATGCAAAAGAAGTTTTGTCATCAAATTTTGATGGGTCTACTACTACTCAGAAAGAGTATCTAGTGAAATATAAAGGTGTTGCTCATGTTCATAATCGATGGTTACCAGAAAACCAGTTACTTCGTGAAGCTCCTTCACTTCTTACAAACTTTAATGTGAAAAATCAGGACCAAAGGTTGAAGCTAGAATGGACTTTACCTCATCGTCTGCTGCAGAAGAGAGCAATAATCAATTCCACTCAGCAAGATGATCACAAGAATAAGGACGGAGTTCAAGGCTTCAATTGTTGCTGCGAATGGCTTGTGAAATGGCGTGGTCTTGGTTATGAGGATGCTACATGGGAATTGGACAGTGCGTTGTTTCTTCGTTCACCTGAAGGTCAGAGGTTAATCAGAGGCTATGAAGAGCGTTTCCAGAGAGCAAAGAGAGCTGCTTCTTGCTCCATGGTAGATAATGTGTCACAGTCTTGTTTTCTAAATCCTGATTGGTGTCTATGGCTTCATCTCAACAACCATCTACAGAAAGTAGCCCGAGGAAGCTCTGTGAGTAAATTATGTCAGATGCCAGGTGGAATTTCTTCTGGAGTGAGTAATAACAATTTGGATGCTGTTAATAAACTACGGGAACATTGGTGCAAGGGTCAGAATGCTATTGTAATTGATGACCATGACAGCATCTTGAAAGTGGTTGCATTTATCTTGTCCTTGCAATCATATACTTGTCAACCTTTCCTCATCATCTCAACCCCCAGTTCTTTGCAATCGTGGGAGGATGAGTTCTACCAGTTGGATCCACCTATAGATGTTGTTACTTACAGTGGAAACAAAGAGATTCGTGACTTTATCAGGAGACTTGAATTTCGTAATGGAGGAGGTTGTATGCTATTCCAAGTACTCATAACTGCTGCAGAGATCTTCATTGAGGATATAGATTTTTTGCGAGGCATAGAATGGGAAGGAATCATTGTGGATGACTACCATTCTGCTAAAGTCTCTTCAAATGTTGAAAGTTTTAAGGTCATGAACACACATTTGAGGATTCTTCTTTACCGTGGGCAACTAAAGGATAGAATTGAAGAATATATTAATATTCTGTCGCTTCTCAATTGTCAAAGTGATTATGAAAAGGATGGTTTAATACCTGATTCTGGTAACAAGATTGATCAACTGAAGGAGCAGCTATCAAGTCATATTGCATTTAAATGCAAGTCTGACTCTGTCCAGTTTATTGAGTATTGGGTTCCTGCCCAGATATCCCATGTGCAACTTGAGCAGTATTGTGCTACTTTACATTCAAATGCTTCAATTCTTCGTTCCTCAGCAAAGACGGATGTCGATGCCCTTCGTGACATCATTATAACAGCCCGAAAGTGTTGTATTCACCCTTCTATTGTTGATCAAACACTGAAAAGCCGACTTATTGTTGGCCTTGATGAGGCTGATTTCATTGATGTTGATATAAAAGCTAGTGGCAAGCTGCAACTACTTGATTCGCTGCTCACGGAGTTGAAGGCTAAAAACTTAAGGGGCCTGGTTCTTTTTAAGTCTATTGGCGGTTCTGGGAGGGTTTCTTCAGGAGATTTTTTGGATGACTTATTGCGACTAAGATTTGGTCCAAACTCTTATGAAAGGATTGATAAAGGTCTTTTAGTGTCCAAGCAGAAAGATGCCATGAGGAAATTTAACAACAAGGATGATGGGCGGTTTGTATTTTTGTTAGACACATGTGCTTGCCGTTCAAGCATCAGACTGTCATCAGTTGATACTATTATTATATTTGATAGTGATTGGAACCCAATGAATGACATAAGATCCCTTCAGAAGATAACACTTGATTCACATCCCGAAGTGATAAAAATATTCCGCTTATATTCATCCTTCACTGTGGAAGAAAATGCCTTGATCCTTTCAAAGCAAGGCAGCATACTTGACAGCAATTTACTGAATATAAGCAGGATTACCTGCCAAATGATGTTGATGTGGGGGGCTGCTTCTCTATTTGATGATTTGAAAATTTTCCATCACAGTGAGACTTCTGTTTTGAGTCAGAAATCTTCGTCTGGGGAACAGCATCTGGCAGAAACAGTCCATGAATTCTCATCGTTACTATCTCAGGATGTTGAAAATGACCCAAGAAACTGTTCAATTTTATTGAAAGTATGGCAAAATGGGTCAACATACCGGGCAGCTTTTCCTTTGCCTGGTGAGCTGAAACATAGGATACTGGAGAAAGAGACTCCCCATCTTTTTTGGACAAATCTTTTGGAGGGGAAACAGTTTCAGTGGAAGTACTCTTGTAGTTCATCTCAGCGGAGCCGAAAGAGAGTAGATCTTTTTGATATGAGTGGAAGTATGGCAACAAAGCGCCATAAAGTGAGCAACAATGTTGTTGACCAGCCTTCTTCAAAATCTGAAAGTGTTAAGTTATCTAATGGAATCAAGTCAGATAGAGTTAGATTTAATGATGTTGAATCTGAGGAAACAACTAGACTGCGCGAAGAGCAGAGGAGCTTGCATCTTTTGCTGAAGCCAGAGATCAGAAAGCTTTGTGAAGTTCTTCTTCTTCCTGATAAAGTCAGGGTTATGGTTGATAATTTTCTTGAATATGTTATGAACAATCATCTTTTCACCAGTGAACAAGTACCAGTATCAAGGTTACAGGCTTTTCAAATATCTTTGATTTGGACTGTTGCTGCATTGCTAAAGCACAAAGGTTACCAGAGAGATTCTCTTTTATTAGCAAAACAGCGTTTGAATTTTGTCTGCAGGAAAGAAGAGGTTAACTATATGTACTCTGTTTTACGCTGTCTGAAGGGACTATTTTTACATCGGATGGGAAATTCAAAGGAACCAGTATCTCCTGAATCATCTAGGAAGGTTTATTCCAGTAAAGAAGTAGCACAAGAGGTTGAATTGTTTAAGAAAGATGTGTTCCAAAGTATTAGTGAAATACGGAGGAAGTGCCAAGAGCAGTTGAAGAAATGTAAACAGATGCAACAAGAAGAGAAGAAAAGTTTAGAAACAGCTCTTGTGAATGAAAAGGCTGAATTTGAGAAAAAGTACAAAATAGAGTTATTAGTTATTCGGACCTGCTCTCCAAATGATGTGATGAAAACAGAGAAGCTCAAGGTCTTGACCACTGAATTTGTTAAAAAAATTGAAGAACTAAAACGTGAGCATGAAACACGGCTGAAGGCTCTTGAGGACAAACATGTGGCTGCTAGGAAGAATATTAAACTTAAGGAAGACGCATGGGCACAAGATGTAGAGGATTGGGCAAAAAATGAATTGTTATACATAGATGCTTCCAAGGAACTTGGGACAGGGGTTGAATACGCGCAACTGTTTGATCAGGAAAATGCTCACAAGGGTTCAGAGGGTATGGCCCTTGTGTCTGATCATTTGACTGACGAGAAGGATCACAATAGCATGATTGGAGCCATGACTACTGATGTTCAGGATGAAGTTCATTCTTCGGCACGGAGTAAATTAGATGGGACTGTTTCAAGCATGTCTTGTGAGAATGCCGTGCAAACCCATGGGGCTGATAAGGTTTTGGATAATGCTACCACTGAAGCTTCACCTTTATCTAATGAAGGAATTGGTGATGGGGCCATGGTAGGCATACTGAATAGCGATGCACCCGGGCCTACCACCGTCACTGCTACTGATTGTCTGGCTAACGTTTCAGCTGTTAGCCCTCCTCCATCTATGGAGCGAGTACCTGATGGAGGTTTGAATGAAATTTTAGATAGATGTGCTACCCCAGAAACTAGCTACGATGAGGGCAGAGTAAGCATATCAGGAAGAGAGGTATCTGTGCAAGTGGAAACACCTAGTATGGCCAATTTTAGTGACTGTCCTGTAAATGCTGCTGCTATGAATCATTTCTCATCTGTGGATCAAACACCTGATAAACGACCTATAAATGTCGCAGATAGCAGTGTCTCATCATTCAGGTCTTGTCAAGCTGATGGTCCGGATAAAGTTTCCCTTCCAAATCCATGTTTTGTACAAGTTACTGATGCAGTCTCTTTGAATGTACCTGATGGAGATACTCCAGTTATGATGTCGGAAAATAGTCATGAAGTGGCTGATTCGCATAATGATACGAGACCTTCAGCAGGCATAATGTCTGTGGATAAAAGTAGTACTGTAGCAGCCCAGCTGGAAGGAGCACAGCAATCACCTTCTCTGGAAGCCCCTCCTGCTCAGGATACTGCTGGAGAAGTGCATAATTCTTCTGAACGAGCTGAGGTAGTATCTGATCCAGTTGGTGTTGTCCCAGCTAATCAATCAAATCAAGTTTCATGCATCCTGCAGCCTTCAGAGAATGTAGTTGAACATCAGCCGACCAGAAATGATGATCTCCCCCACAGAGAAGCAGAGACTTCAGCTGCGCTTCCAAATCAGGATGTTGTGCAAGTTAACTCAAATTTGGAGCTTGGTTCACACTCACATACGGTGGTGCACTCTGTCCTAAATTTGGACCATGATTCACTTGGACCTGTTGGTGTCAGAACAGAGGTTTCAAACTCGACAAATTTGCCAACTCCTCCAGAAATAAACAATCATCCTATACAAACTGCAACTCATTCAGCTTCTAGAATGGCTCCTCCGTTGTGCGCCGATCCACTTAAAAATGAATTGGAAAGAATAAGAAAAATTATCGAACAATTGACAAAAAACCATGGAGAGATGAGATCTCGATTGAAGTCTGATTTCGAAAAGGAATTGGAGGCACTTCGCAGGAAGTATGATATTAAATTTCAATTGACTGAGCATGAATTTCAACAAACGAAGAACAACTTGGATTCAAGTTACCGCACAGTTTTGTTAAATAGGATCTTGGCGGATGCTTTTAGGTCCAAATGCATGTATCGTAAAGTGTCTGATGCATATGGAGTGCAGCAAGGTGTTGCCCAGCAGTCAGTTCAGCTTGCAAGACAACAAAGTGGTACTTTTCCTTCCCAGGTTGTTGCTGGTTTATCTTCCCGAGGACCACTTTCTGCCAATCTTCATAGTCCATCTGCTTTGGTTAGCTCTCCGAATTCGCTCTCACCTTCAAATGCTGCTTACAATACACCAAGAATTCTCTCCAATCCTCCTGCAAGACTTCCTCCTCTAAACTGTAATTCTTCACCCTCTGGGAATTTTCCAGTTGCCAGTGAGATGCGAGCCCCTGCACCACATCTCCAGCCTTTTAGACCCTCAACACCTATGCTGGCTGCTAACCACCCTGCTCTTCTTCATGGGATGCCAAATCAGCCCACACCTATTAACGTACCTGTGATTGCTCCCACATTGTCTCGTGGTCCCGCCCAACCAACTCTACCAGCATATCAGTCTGTTGGGTTTTCCACCCTTAGCTTACGTGCCACAGGTTTACGTGCTGATGGCCACACTCAATCTACTGTTTGTCTCCCAAAAGTTCAGCCAAGTATGTCTGAAGTGGTTTCTTTGAACCCACCAAGAGTTGGCTCCAGTGTTGGTGTGACGCCTAACTCTACCAGTCAAGCTGCATCTCCTGAATTAGTCTGTTTATCAGACGATGAGGATGAGTGA 6495 0.4172 MSNKDAKPNMPSPVRRSGRNRSNSSISPSNSESSGSMNSKQKPKKEKSVKQLTFEAKEVNENEEHDLGSSHLEPKRRDARWYRSLFRKPKNGCLTQSKKIDQSFKEIHLNCKEASKNGTLPSQVDSKLAGTVKNLVDPKVGLLVPSNGTNSETNEVPQRAQPDTCGNGTVQLPESRNSLLDEDLVRNDIGHDDVATGGSCSKRRRLDCDPMISSNPSTTEDAADTDPSMLQKEYPVNSPKEVIKHTCLICKKGGQLLFCGGKGCSGCYHSSCLEPPLVDASVGVWHCHFCVRKKIEFGVYSVSEGVESIWDAKEVLSSNFDGSTTTQKEYLVKYKGVAHVHNRWLPENQLLREAPSLLTNFNVKNQDQRLKLEWTLPHRLLQKRAIINSTQQDDHKNKDGVQGFNCCCEWLVKWRGLGYEDATWELDSALFLRSPEGQRLIRGYEERFQRAKRAASCSMVDNVSQSCFLNPDWCLWLHLNNHLQKVARGSSVSKLCQMPGGISSGVSNNNLDAVNKLREHWCKGQNAIVIDDHDSILKVVAFILSLQSYTCQPFLIISTPSSLQSWEDEFYQLDPPIDVVTYSGNKEIRDFIRRLEFRNGGGCMLFQVLITAAEIFIEDIDFLRGIEWEGIIVDDYHSAKVSSNVESFKVMNTHLRILLYRGQLKDRIEEYINILSLLNCQSDYEKDGLIPDSGNKIDQLKEQLSSHIAFKCKSDSVQFIEYWVPAQISHVQLEQYCATLHSNASILRSSAKTDVDALRDIIITARKCCIHPSIVDQTLKSRLIVGLDEADFIDVDIKASGKLQLLDSLLTELKAKNLRGLVLFKSIGGSGRVSSGDFLDDLLRLRFGPNSYERIDKGLLVSKQKDAMRKFNNKDDGRFVFLLDTCACRSSIRLSSVDTIIIFDSDWNPMNDIRSLQKITLDSHPEVIKIFRLYSSFTVEENALILSKQGSILDSNLLNISRITCQMMLMWGAASLFDDLKIFHHSETSVLSQKSSSGEQHLAETVHEFSSLLSQDVENDPRNCSILLKVWQNGSTYRAAFPLPGELKHRILEKETPHLFWTNLLEGKQFQWKYSCSSSQRSRKRVDLFDMSGSMATKRHKVSNNVVDQPSSKSESVKLSNGIKSDRVRFNDVESEETTRLREEQRSLHLLLKPEIRKLCEVLLLPDKVRVMVDNFLEYVMNNHLFTSEQVPVSRLQAFQISLIWTVAALLKHKGYQRDSLLLAKQRLNFVCRKEEVNYMYSVLRCLKGLFLHRMGNSKEPVSPESSRKVYSSKEVAQEVELFKKDVFQSISEIRRKCQEQLKKCKQMQQEEKKSLETALVNEKAEFEKKYKIELLVIRTCSPNDVMKTEKLKVLTTEFVKKIEELKREHETRLKALEDKHVAARKNIKLKEDAWAQDVEDWAKNELLYIDASKELGTGVEYAQLFDQENAHKGSEGMALVSDHLTDEKDHNSMIGAMTTDVQDEVHSSARSKLDGTVSSMSCENAVQTHGADKVLDNATTEASPLSNEGIGDGAMVGILNSDAPGPTTVTATDCLANVSAVSPPPSMERVPDGGLNEILDRCATPETSYDEGRVSISGREVSVQVETPSMANFSDCPVNAAAMNHFSSVDQTPDKRPINVADSSVSSFRSCQADGPDKVSLPNPCFVQVTDAVSLNVPDGDTPVMMSENSHEVADSHNDTRPSAGIMSVDKSSTVAAQLEGAQQSPSLEAPPAQDTAGEVHNSSERAEVVSDPVGVVPANQSNQVSCILQPSENVVEHQPTRNDDLPHREAETSAALPNQDVVQVNSNLELGSHSHTVVHSVLNLDHDSLGPVGVRTEVSNSTNLPTPPEINNHPIQTATHSASRMAPPLCADPLKNELERIRKIIEQLTKNHGEMRSRLKSDFEKELEALRRKYDIKFQLTEHEFQQTKNNLDSSYRTVLLNRILADAFRSKCMYRKVSDAYGVQQGVAQQSVQLARQQSGTFPSQVVAGLSSRGPLSANLHSPSALVSSPNSLSPSNAAYNTPRILSNPPARLPPLNCNSSPSGNFPVASEMRAPAPHLQPFRPSTPMLAANHPALLHGMPNQPTPINVPVIAPTLSRGPAQPTLPAYQSVGFSTLSLRATGLRADGHTQSTVCLPKVQPSMSEVVSLNPPRVGSSVGVTPNSTSQAASPELVCLSDDEDE 2164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30525g00008 2164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 543 654 IPR027417 -
Stsc30525g00008 2164 SMART PHD_3 246 291 IPR001965 -
Stsc30525g00008 2164 MobiDBLite consensus disorder prediction 1699 1728 - -
Stsc30525g00008 2164 CDD SF2_C_SNF 800 913 - -
Stsc30525g00008 2164 SUPERFAMILY Chromo domain-like 263 367 IPR016197 -
Stsc30525g00008 2164 MobiDBLite consensus disorder prediction 146 173 - -
Stsc30525g00008 2164 Coils Coil 1360 1394 - -
Stsc30525g00008 2164 Gene3D - 300 366 - -
Stsc30525g00008 2164 Coils Coil 2158 2164 - -
Stsc30525g00008 2164 Gene3D - 367 447 - -
Stsc30525g00008 2164 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 805 969 IPR001650 -
Stsc30525g00008 2164 Gene3D - 720 954 IPR027417 -
Stsc30525g00008 2164 SMART chromo_7 373 449 IPR000953 -
Stsc30525g00008 2164 SMART chromo_7 309 366 IPR000953 -
Stsc30525g00008 2164 MobiDBLite consensus disorder prediction 1661 1686 - -
Stsc30525g00008 2164 Pfam SNF2-related domain 537 773 IPR000330 GO:0005524|GO:0140658
Stsc30525g00008 2164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 719 958 IPR027417 -
Stsc30525g00008 2164 Gene3D - 510 719 IPR038718 -
Stsc30525g00008 2164 SUPERFAMILY FYVE/PHD zinc finger 242 294 IPR011011 -
Stsc30525g00008 2164 ProSiteProfiles Zinc finger PHD-type profile. 244 293 IPR019787 -
Stsc30525g00008 2164 MobiDBLite consensus disorder prediction 1984 2005 - -
Stsc30525g00008 2164 Coils Coil 1853 1880 - -
Stsc30525g00008 2164 PANTHER HELICASE PROTEIN MOM1 4 2162 IPR039322 GO:0031507
Stsc30525g00008 2164 Gene3D - 1853 1934 - -
Stsc30525g00008 2164 MobiDBLite consensus disorder prediction 2132 2164 - -
Stsc30525g00008 2164 MobiDBLite consensus disorder prediction 2132 2154 - -
Stsc30525g00008 2164 ProSitePatterns Zinc finger PHD-type signature. 247 290 IPR019786 -
Stsc30525g00008 2164 ProSiteProfiles Chromo and chromo shadow domain profile. 381 456 IPR000953 -
Stsc30525g00008 2164 Coils Coil 1291 1326 - -
Stsc30525g00008 2164 MobiDBLite consensus disorder prediction 1 50 - -
Stsc30525g00008 2164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 297 IPR013083 -
Stsc30525g00008 2164 SUPERFAMILY Chromo domain-like 407 447 IPR016197 -
Stsc30525g00008 2164 ProSiteProfiles Chromo and chromo shadow domain profile. 310 373 IPR000953 -
Stsc30525g00008 2164 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30525g00008 Stsc-Chr30525 29638 42551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30525g00008 247 414 Core DNA Replication Machinery Family AT4G14700 26.857 9.62e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30525g00008 - K11643 aip:107610432 2113.96