Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30525g00002 ATGGCTAATAATGAAAGCAATAATCCCAACAACACTGCTCATGTGGCTACTGAGATGAATAATGTGTCTTATAACCAGCACTATGAGAAGCCTACAACTTGTTACAATGAATTCACAGATGTAATGGCTAATAGAGAAATTCAGAAGCAATTGGGAGGAGTACTGCATCATCCTTCTTCTTCGTCGTCATCGCCATCGCCATTTTATCAGAATACTTTGCATGATATTGTCAAGTCAGCTTCTATAAGTGCTCAAGTATCAGACAACATGGCCTCACTAATGCAGCAAACTGGTCATGGAATTTGGGTTGGAGATGGTAGTGGACTTGACCTTCATCCAAGCTATGGAAACCAACCAAATCAATTGCGTTGCGGCGGTGCTAATCCATGGGCGAATCGAACGGTTGACAATGCCATTCGATGGAACAATAGTCCACTTGGTTTCACAGACAAGAAGGTTGATGAACACTCTGGACGGCCTCTAATGAACAATTCAAATCCTCAGAGCTTGTCGTTATCACTGTCATCAAATTCACAATCAAAGACTTCTGTGTCTCAATTTGAGGAAGTGTCAGCATCAGATGATCTTCAATGTAAGGATCCTCAGTACATGAAGTATGTAAGAGCTTTCACAAAGCCTTCTATAGTTTCAAGAGATTCTGGGAAATCACCTCAAGATCCAATGGGGGTGCCTTCAAGCACTAGCTATAGGAATGTAGGTCCCCTTGGTCCTTTCACTGGTTATGCTACTATTCTCAAGAGCTCAAGGTTCTTGAAATCAGCACAGCAGTTATTGGATGAGTTCTGCCGTATATCTAGTCCAAAATTTTCAAAACCACGTGATGTCACACAAAGGCTATCTGGAGAAGCCAGTGCTTCTACTTCTGCTGATGTTGTCACTGTTGATAATCAAACTGAGGCTGCAGCCAAAGAAGGGAGTAATTCAGGTTCTTCATCTTCTATGTTCCATGGTGCAAATGACAATAATGCAGATTGGAGAACCGGGAGTGGTTCTAGTCTATCTCCTAGGCCGGATTATCAACAGAAGAAGGCAAGGCTCCTTTACATGCAAGAGGAGGTTACCAGGAGATACAGGCAGTACCATCAACAAATGCAGATGGTTGTTTCATCCTTTGAGTCGGTAGCTGGTCTTAGTTCTGCCACTCCTTATATCTCCTTGGCTCTTAAGTCGGTATCGAGGCACTTCAAGTTCCTGAAAAATTCCATCTCAGATCAGCTCAAACATATAAGTGAAGTGCTGGGTGAGGATTTCTCAGTACAGAGAACCGGTACTTGTGCTAAAGATGACACCACTAACATGGTAAGACTAAGTTGCATGGACCAAAGCTTCCAAAAGAACAAATCTGGGAGGGCTGGCGCCGGCCTTGTTGAACCCCAGCAGCATGTCTGGAGGCCCCAAAGAGGCTTGCCAGAACGTTCTGTGGCAATTCTCAAAGCATGGCTATTCGAGCATTTTCTTCACCCTTACCCCACAGACACGGATAAACACATGTTGGCATCTCAAACAGGTCTTTCACGAAACCAGGTGTCGAATTGGTTCATAAATGCTCGAGTCCGGGTATGGAAGCCGATGGTTGAGGAAATACACATGCTTGAAACAAAAGGCACAACAGGTGCCAACAAGAACAACAATCATCCTGCTACTGAAAATGAGAGAGCTTCTGTTAATGAAGATGGTTCAAGCAGCCAACAGCATAGAGTAATGGAGGGGAATATGAGCAAGTTCGACATGCATTCTTTGATTCCTGAGAACCAACAGTCGCAGCATCAGTGTATGGAACTTGAAATGGACTCAACCAATGAAGAAGAACAATGGAGCCAAGAGAAGAGGTCTAAATTGGAATGTGAGATGAGTTCAACAAGCATGGCTGAAGGGTCACTCATGATGGGTTTCATGCCATATAGCAGGCGTGATCAGGTTGGTGGGCTTGGTTCTGTGTCACTAACATTGGGTCTGAGGCATGGTGTTGAAGCTGTTGTGCAAAACCAACAGCAGCAGCAACAGTTACAGGAGGAGCAGCTTAGGCGTCACTTTGGAGGACACATGATCCATGATTTTGTGGGCTGA 2088 0.443 MANNESNNPNNTAHVATEMNNVSYNQHYEKPTTCYNEFTDVMANREIQKQLGGVLHHPSSSSSSPSPFYQNTLHDIVKSASISAQVSDNMASLMQQTGHGIWVGDGSGLDLHPSYGNQPNQLRCGGANPWANRTVDNAIRWNNSPLGFTDKKVDEHSGRPLMNNSNPQSLSLSLSSNSQSKTSVSQFEEVSASDDLQCKDPQYMKYVRAFTKPSIVSRDSGKSPQDPMGVPSSTSYRNVGPLGPFTGYATILKSSRFLKSAQQLLDEFCRISSPKFSKPRDVTQRLSGEASASTSADVVTVDNQTEAAAKEGSNSGSSSSMFHGANDNNADWRTGSGSSLSPRPDYQQKKARLLYMQEEVTRRYRQYHQQMQMVVSSFESVAGLSSATPYISLALKSVSRHFKFLKNSISDQLKHISEVLGEDFSVQRTGTCAKDDTTNMVRLSCMDQSFQKNKSGRAGAGLVEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGTTGANKNNNHPATENERASVNEDGSSSQQHRVMEGNMSKFDMHSLIPENQQSQHQCMELEMDSTNEEEQWSQEKRSKLECEMSSTSMAEGSLMMGFMPYSRRDQVGGLGSVSLTLGLRHGVEAVVQNQQQQQQLQEEQLRRHFGGHMIHDFVG 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30525g00002 695 MobiDBLite consensus disorder prediction 279 345 - -
Stsc30525g00002 695 SMART prehox3 246 411 IPR006563 -
Stsc30525g00002 695 Gene3D - 473 535 - -
Stsc30525g00002 695 MobiDBLite consensus disorder prediction 150 177 - -
Stsc30525g00002 695 MobiDBLite consensus disorder prediction 279 348 - -
Stsc30525g00002 695 MobiDBLite consensus disorder prediction 541 571 - -
Stsc30525g00002 695 CDD homeodomain 470 531 IPR001356 GO:0003677
Stsc30525g00002 695 SUPERFAMILY Homeodomain-like 472 537 IPR009057 -
Stsc30525g00002 695 Pfam Associated with HOX 251 410 IPR006563 -
Stsc30525g00002 695 SMART HOX_1 470 534 IPR001356 GO:0003677
Stsc30525g00002 695 Pfam Homeobox KN domain 487 526 IPR008422 GO:0003677|GO:0006355
Stsc30525g00002 695 MobiDBLite consensus disorder prediction 216 235 - -
Stsc30525g00002 695 MobiDBLite consensus disorder prediction 159 177 - -
Stsc30525g00002 695 FunFam BEL1-like homeodomain protein 9 473 535 - -
Stsc30525g00002 695 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 159 558 - -
Stsc30525g00002 695 ProSiteProfiles 'Homeobox' domain profile. 467 530 IPR001356 GO:0003677
Stsc30525g00002 695 MobiDBLite consensus disorder prediction 542 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30525g00002 Stsc-Chr30525 8957 13645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30525g00002 252 661 Homeobox Transcription Factor Family AT4G34610 38.221 1.16e-65 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc30525g00002 POX 5.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30525g00002 - - adu:107461750 1213.36