Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30522g00005 ATGGAGGAAGCAATGGCGGCAAGGTATTGGTGTCATATGTGCTCACAAATGGTGAATCCCGTCACCGAAGGCGAGATCAAATGCCCATTTTGCCACAGTGGATTTGTTGAAGAAATGAGTAACACCACTGCTGCTAACAATATGCCGGAAGCTCCTGATTTCGGCCCTGACCGGACAGTTTCCCTTTGGGCTCCCATCTTGTTAGGCATGATGAGCAATCCGCATAATCGTCGAAGGCCTAGGCGAATAGGGCTCGATGATGATGACGACGACAACAACCATGATGATCATAATAATGGTAGTGGCAATAATGGTAATGCTACAAATAATGGCAACGGTAACAGTAACAGTAATGAAAATGGTAATGCTTTTGCGCGCCTTGGTGGAGAAAACGAATATGATCGAGAGCTTGAGTCTATCCTTCGGAGGAGAAGAAGAAGCTCAGCTACCATACTTCAATTGCTCCAAGGCATTAGAGCTGGGCTGGCATCTGAGCTGAATGAGAATGCCGACGGCGATGGGCATGGTAGGGAAAGAGAAAGAGAAAGAGACAGAGAGCGCGTAATCTTGATCAACCCTTTTAATCAGACTATTATTGTTCAAGGCTCCTACGACTGGAACCGTGGTCAGGGTGATAATCATACCCCCATTGGTTCTCTGGGTGACTATTTCATTGGTCCCGGTTTGGATTTACTGTTGCAGCATTTGGCCGAGAATGATCCCAATCGGCATGGAACTCCGCCTGCTCAGAAGGAGGCCATTGAAGCTTTGCCTACTGTGACAATTGACGAGAATATGCAATGTTCTATTTGTCTTGATGAACTTGAACTTGGTTCTGAAGCCAAACAGATGCCCTGTAAACATATGTTTCATGGCGGATGTATCCTGCCTTGGTTGGAGCTTCATAGTTCTTGTCCGGTTTGCAGGTATCAGTTGCCAGCTGATGAATCTAAGTGCGAACCAGATGCGTCCTTGAGGACTAGCAGCAATCAAAGGGAGGATGAAAATGCTGCACATGACAATGTGGATGGGGATATTGAAGGAAGAAATGCAAATGGGGGTAGAAGATTCTCCTTTCCATGGCCTTTCAATGGTTTATTTTCTTCATCAAGCCCTTCAGCAGCATCTTCTTCTAGCAACAATAATTCAAATGGAGATAATGGTACTCGATCAGAAGAGAACTGA 1185 0.4565 MEEAMAARYWCHMCSQMVNPVTEGEIKCPFCHSGFVEEMSNTTAANNMPEAPDFGPDRTVSLWAPILLGMMSNPHNRRRPRRIGLDDDDDDNNHDDHNNGSGNNGNATNNGNGNSNSNENGNAFARLGGENEYDRELESILRRRRRSSATILQLLQGIRAGLASELNENADGDGHGRERERERDRERVILINPFNQTIIVQGSYDWNRGQGDNHTPIGSLGDYFIGPGLDLLLQHLAENDPNRHGTPPAQKEAIEALPTVTIDENMQCSICLDELELGSEAKQMPCKHMFHGGCILPWLELHSSCPVCRYQLPADESKCEPDASLRTSSNQREDENAAHDNVDGDIEGRNANGGRRFSFPWPFNGLFSSSSPSAASSSSNNNSNGDNGTRSEEN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30522g00005 394 ProSiteProfiles Zinc finger RING-type profile. 268 309 IPR001841 -
Stsc30522g00005 394 MobiDBLite consensus disorder prediction 369 394 - -
Stsc30522g00005 394 MobiDBLite consensus disorder prediction 319 350 - -
Stsc30522g00005 394 MobiDBLite consensus disorder prediction 98 124 - -
Stsc30522g00005 394 SUPERFAMILY RING/U-box 258 315 - -
Stsc30522g00005 394 MobiDBLite consensus disorder prediction 369 388 - -
Stsc30522g00005 394 Pfam Ring finger domain 267 309 IPR001841 -
Stsc30522g00005 394 MobiDBLite consensus disorder prediction 71 126 - -
Stsc30522g00005 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 315 IPR013083 -
Stsc30522g00005 394 SMART ring_2 268 308 IPR001841 -
Stsc30522g00005 394 MobiDBLite consensus disorder prediction 319 353 - -
Stsc30522g00005 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 146 313 - -
Stsc30522g00005 394 FunFam E3 ubiquitin-protein ligase RING1-like 235 315 - -
Stsc30522g00005 394 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30522g00005 Stsc-Chr30522 43912 46357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30522g00005 152 315 C3H Transcription Factor Family AT1G26800 37.952 1.34e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30522g00005 - K11982 aip:107625235 632.484