Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30519g00006 ATGGCATCATCATCATCATCATCATCATCTGCTACTTTTCATGTTCCTAGCATCAAACATGACATGTTCATAAGTTTCAGAGGGAAAGACATTCGCAGCTCGTTCCTCAGCCATTTAGTGAAAGAACTACGCCATAACCAGATTGATGCTTACATTGATGAGAGACTCCACCGTGGAGACGAGATATCGCTCGCGCTTCTTCAAGCCATTCGCGAAGCCTTCATTTCACTCGTTATCTTCTCGAAACACTATGCTTCGTCAACGTGGTGCTTGGAAGAGCTTGTGGAGATAATTGAATGTATGGAACAACATCATCGGATCGTGGTTCCTGTTTTCTACGGTGTCGATCCGTCTGATGTTCGACATCAAAGAGGGCCTTTCGGAGAGGCGTTGGATAAACACCAAAAGAAGCTTAAGCAAAATGTGGTGAAGGTGCAGAGCTGGAGATCTGCTTTAAAGAAAGCTGCTAATTTATCTGGATTTCATTATCCATCACAATATCTGAATGAATCTGAACTTATTGAGGACATTGTCAAAGATGTTTTAGAGAAAATATCCCATGTTTTCCCAAGTCAAGACAATAACCTTGTTGGAGTAGATCGAAACTTGGAAGCTATTGAATCATTATTGGCAATGAAGTCAAGCGATGAAACTCGAATCCTGGGGATTTGGGGAATGGGAGGTGTAGGAAAGACAACAATTTCCAGGGCAATATTTGAAAAATATTCTACTCAATATGAAGGTTGCTGCTTTCTGGAAAATATAAGAGAAGAATCACAAAAACATGGACTACCTTATTTATCTCAGAAACTCTTCTCTGAACTGCTAAAGGGAGAGCATTTGCTTTTGAAAGAACTCACCAACACTTCGAATGCAAACATTATGAGAAGGCTAAGTCGCAAGAAGGTTTTCATTGTGCTAGATGATGTGAATACATTGAAACAATTAGAGCATCTAATCGGAGAGCGAGTTCGGTTGGGCCAAGGTAGTAGGGTCATTGTAACAACCAGAGACAAGCACATTCTAAGAAATGTGTATGCAATATATGAGGTACAAAAGTTGAACTTTGAGAATTCCCTTCAGCTTTTCTGCTTGAATGCCTTCAACAAAACCAGTCCTGAAACCGGTTATGAAAAGCTATCGGAAATGGTGGTTGGTTATGCAAATGGCATCCCATTAGCTTTAAAGGTTCTTGGTTCCTTTTTATACTCTAGAAGCATTGAAGCTTGGGAAAGTGCACTAAGGAAGCTCAAGGTTTATCCAAATATGGAAGTTTATAATGTCTTAAAACTGAGTTATGACGGACTTGATGATTCAGAGAAGAACATATTCCTTGACATTGCATTCTTTTTCAAAGGAGAAGATAAGGATGATGTCATAAGGCTACTTGATTCTTGTGGTTTCTTTGCAGCAATTGGAATAGACACCCTTATACGCAAAGCTCTTGTAACTATTTCAAGAGACAATAGAATACAAATGCATGATTTAATAGAACAAATGGGTTGGGAGATTGTCCACCAGGAATCTCTTAAAGACCCGGGAAGACGCAGTCGACTGAGGAATCCTGAGGATGTCTGCAATGTATTGAAAAATAGTAAGGGAACAAACTTAGTTGAAGGCATTATTTTGGACTTGTCTCAATGTAGAGATCTACACTTGAATGCTGACACCTTCAAAAAGATGCCTAACCTAAGATTTCTCAAGTTTTATGCCTCTGAACATCAAAGATCATCAACTGTGTTCACGCCTACAGCCCTTGAGTCATTTTCTGATGAACTAAGATATTTGGAATGGAGTGGATACCCTTTGAAGTCTCTCTCTTCAATGTTTAGTGCTGAGAAGCTTGTTGAGCTTCACATGCCGCATAGTCAAGTTTCTAAACTTTGGGATGGAATTCAGGATCTAGTGAATTTAAAGGAAGTGGTCCTTTTTTCATGTCAGCAGTTAGTGGAGCTTCCGGATTTCACTAAGGCAACAAATCTTGAAATGATAGACCTCGCCTTTTGCGAAAGTCTATGTGATGTTCATCCATCCATTTTATCAATTCACACACTTGAGTATTTGAATCTCCATTACTGCAGAAGCTTAAAGAGTCTTAAAGGAGAGATTCATCTTGAACATCTGGAAAACCTCATAGTTAGCAGCTGCCCAAGCCTTGAGGAGTTTTCAATGTCTTCGGATGAAATTAGGGAGCTAAATCTAAGGGGGACAAGAATCAAAGTGCTACAATCATCAATTGGTTGTATTAGCAACCTTGAAAGGTTCGATCTTAGTAACTCAAGAATTAAAAGTCTTCCAAATGAGTTATGTTCCCTAACCTCTCTTGAAAGACTATTGCTTTCTGGGTGCAAACATTTAATGGAACTCCCTCACAATATCAAATCGCTATCGCGATTAAAGATTCTTAACATAAAGAATTGCAAGAGCCTCCGCTTCATACCAGAGCTGCCACTATCTATTACAGAATTAGTTGCCACTAACTGCACATCATTGGAGACAGTAAGCAATTTAAAAGAAGTATTCACTTTGAACAAGGAATACATTTCATTTGAAAACTGCAAGAAATTGGATGAGAATTCGCTCTATGAAATCATGGAAGATGCTTATCTCACAATGATGCAAGCAGCAATAAGAACTCTATTGGTAAGGAGGACACATCTTTCTGAGAAGTGGAGAGCAAGTGAATCTAATGGTGCAGAATTTTGTTATCCTGGAAGTAAAGTTCCAGAGTGGTTCAGATATCAAACAAAGCAAGCTTCCATAACTGTTGAACTTGATCAGCCATCAGAGTTATTGGGTTTTATAGTCTGTTGTGTTACTTCTCTGGTCCCATTCAATAAAAGTCCTCATGGTCCAGATTTTAAGTACTTGCTGCTAGATGATGGAAGGGACAAGAACAGAAATGGATGGAGTTACACTTCAGTGGAAGAATTGTACTCAGATCATGTCAACATGCGATATTATCCGTCTCGTTCTGACAGAGTATTGAACCCAAGGATTTCATTTGAGTTCTTCACTCTATCAGATAATGGGTACAAAGTAGAAGTTAGACCTGAAAATGGACGCAAAGCGGAGGAAAATTTCGCCTTTGCTGCTGGGACACCAGAATATGCTTGTGTAGTCAAAGAGAGTGGGATGAGTCCAGTATATGTCTCAGACATCAAGAATTTCATTCAAAAAATGCAAGTGGAATTGGAGCTTGATGATGCATCCAACAAGTATAATGGTCTAGATGAATTGGAGCTTAGCACATTGAGAAGTTTATTCAGTTCAAAGATGAAAGATGATCGATAA 3294 0.3907 MASSSSSSSSATFHVPSIKHDMFISFRGKDIRSSFLSHLVKELRHNQIDAYIDERLHRGDEISLALLQAIREAFISLVIFSKHYASSTWCLEELVEIIECMEQHHRIVVPVFYGVDPSDVRHQRGPFGEALDKHQKKLKQNVVKVQSWRSALKKAANLSGFHYPSQYLNESELIEDIVKDVLEKISHVFPSQDNNLVGVDRNLEAIESLLAMKSSDETRILGIWGMGGVGKTTISRAIFEKYSTQYEGCCFLENIREESQKHGLPYLSQKLFSELLKGEHLLLKELTNTSNANIMRRLSRKKVFIVLDDVNTLKQLEHLIGERVRLGQGSRVIVTTRDKHILRNVYAIYEVQKLNFENSLQLFCLNAFNKTSPETGYEKLSEMVVGYANGIPLALKVLGSFLYSRSIEAWESALRKLKVYPNMEVYNVLKLSYDGLDDSEKNIFLDIAFFFKGEDKDDVIRLLDSCGFFAAIGIDTLIRKALVTISRDNRIQMHDLIEQMGWEIVHQESLKDPGRRSRLRNPEDVCNVLKNSKGTNLVEGIILDLSQCRDLHLNADTFKKMPNLRFLKFYASEHQRSSTVFTPTALESFSDELRYLEWSGYPLKSLSSMFSAEKLVELHMPHSQVSKLWDGIQDLVNLKEVVLFSCQQLVELPDFTKATNLEMIDLAFCESLCDVHPSILSIHTLEYLNLHYCRSLKSLKGEIHLEHLENLIVSSCPSLEEFSMSSDEIRELNLRGTRIKVLQSSIGCISNLERFDLSNSRIKSLPNELCSLTSLERLLLSGCKHLMELPHNIKSLSRLKILNIKNCKSLRFIPELPLSITELVATNCTSLETVSNLKEVFTLNKEYISFENCKKLDENSLYEIMEDAYLTMMQAAIRTLLVRRTHLSEKWRASESNGAEFCYPGSKVPEWFRYQTKQASITVELDQPSELLGFIVCCVTSLVPFNKSPHGPDFKYLLLDDGRDKNRNGWSYTSVEELYSDHVNMRYYPSRSDRVLNPRISFEFFTLSDNGYKVEVRPENGRKAEENFAFAAGTPEYACVVKESGMSPVYVSDIKNFIQKMQVELELDDASNKYNGLDELELSTLRSLFSSKMKDDR 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30519g00006 1097 Pfam NB-ARC domain 203 429 IPR002182 GO:0043531
Stsc30519g00006 1097 Pfam Leucine Rich Repeat 614 633 IPR011713 -
Stsc30519g00006 1097 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 187 - -
Stsc30519g00006 1097 ProSiteProfiles TIR domain profile. 18 185 IPR000157 GO:0007165
Stsc30519g00006 1097 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 447 IPR027417 -
Stsc30519g00006 1097 SUPERFAMILY L domain-like 537 854 - -
Stsc30519g00006 1097 Gene3D Ribonuclease Inhibitor 484 703 IPR032675 -
Stsc30519g00006 1097 Pfam TIR domain 19 195 IPR000157 GO:0007165
Stsc30519g00006 1097 SMART till_3 19 158 IPR000157 GO:0007165
Stsc30519g00006 1097 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 161 IPR035897 -
Stsc30519g00006 1097 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 723 IPR044974 GO:0006952
Stsc30519g00006 1097 Gene3D - 17 182 IPR035897 -
Stsc30519g00006 1097 SUPERFAMILY "Winged helix" DNA-binding domain 424 530 IPR036390 -
Stsc30519g00006 1097 Coils Coil 1060 1080 - -
Stsc30519g00006 1097 Pfam C-JID domain 903 1053 IPR045344 -
Stsc30519g00006 1097 Gene3D - 183 350 IPR027417 -
Stsc30519g00006 1097 PRINTS Disease resistance protein signature 297 311 - -
Stsc30519g00006 1097 PRINTS Disease resistance protein signature 794 810 - -
Stsc30519g00006 1097 PRINTS Disease resistance protein signature 220 235 - -
Stsc30519g00006 1097 PRINTS Disease resistance protein signature 388 402 - -
Stsc30519g00006 1097 Gene3D Ribonuclease Inhibitor 704 858 IPR032675 -
Stsc30519g00006 1097 Gene3D - 353 437 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30519g00006 Stsc-Chr30519 36644 41085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30519g00006 17 825 WRKY Transcription Factor Family AT4G12020 35.480 4.18e-121 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30519g00006 - - ahf:112728432 1122.07