Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30518g00008 ATGACTGCAGGGAGAGGAATAGTTCATTCAGAAATGCCTGCATCTCAAGGAACTCAAAAGGGTCTCCAATTATGGATCAATCTTGCTTCACAAAACAAAATGATTGAACCAAAGTATCAAGAAATGCTAAGCAAGGACATAGCAGAAGCTATGAAAGATGGTGTGAAGGTTAGAGTAATAGCAGGGGAAGCACTTGGTATAAAGTCTCCAATCTACACAAGGACACCAACAATGTACTTGGACTTAATTCTCAAACCTGGCTCACACTTGCAACAACCTATACCAAAATCTTGGAATGCTTTTGTGTATGTTTTGGAAGGAGAGGGTATTTTCGGAAACCAAAAGTCTCAGCCTATAAGTTCACACCACATTCTTCTTCTTGGCAGTGGTGATGGATTAGAGGCATGGAACAAATCTTCAAAGCAACTCAGGTTCATTCTTGTTGGAGGTGAACCACTAGGTGAACCTGTGGTTCAGTTTGGGCCATTTGTTATGAACACTCAAGAAGAAATTGACCAAACCATTGATGACTTTGAGAACTATGCTAATGGATTTGAGAAAGCAAGGCAATGGAGATCTCAAAGTGCACTTAGCCTTGACTATTGA 606 0.4043 MTAGRGIVHSEMPASQGTQKGLQLWINLASQNKMIEPKYQEMLSKDIAEAMKDGVKVRVIAGEALGIKSPIYTRTPTMYLDLILKPGSHLQQPIPKSWNAFVYVLEGEGIFGNQKSQPISSHHILLLGSGDGLEAWNKSSKQLRFILVGGEPLGEPVVQFGPFVMNTQEEIDQTIDDFENYANGFEKARQWRSQSALSLDY 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30518g00008 201 PIRSF Pirin 1 192 IPR012093 -
Stsc30518g00008 201 Gene3D Jelly Rolls 1 157 IPR014710 -
Stsc30518g00008 201 Pfam Pirin C-terminal cupin domain 79 182 IPR008778 -
Stsc30518g00008 201 SUPERFAMILY RmlC-like cupins 1 193 IPR011051 -
Stsc30518g00008 201 CDD cupin_pirin_C 76 152 - -
Stsc30518g00008 201 PANTHER PIRIN-RELATED 1 195 IPR012093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30518g00008 Stsc-Chr30518 53942 55777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30518g00008 1 199 Calmodulin-binding Proteins AT1G50590 67.308 1.95e-96 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30518g00008 K06911 - gmx:100790637 374.785