Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30518g00004 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGGATTTCATGGGACACTGATGAGGAACGCCTCAAGGAATATTTTGGGAAATTTGGTGAGGTGATAGAAGCTGTGATCATGAGGGATCGGACGACGGGACGTGCTCGTGGATTCGGCTTTGTTGTCTTTGCTGATCCTGCTGTTGCAGAAAGAGTCATCATGGATAAGCATGTAATCGATGGCCGCACGGTCGAAGCAAAGAAGGCTGTTCCCCGAGACGATCAGCAAACTATAAATAGGCAGTCTGGTAGCATGCAGGGATCTCCGAGTCCTGGTCGCACGAAGAAAATTTTTGTTGGAGGCTTACCATCAACGATCACGGAAAGTGATTTCAAGAAGTATTTTGATCAGTTTGGTACGATTACTGATGTTGTAGTGATGTATGATCACAATACTCAGAGGCCAAGAGGATTTGGCTTCATCACTTATGATTCGGAAGAAGCTGTGGACAGAGTTCTTTATAAATCATTTCATGAACTCAATGGGAAGTTGGTTGAGGTCAAGAGGGCAGTTCCTAAAGATCTTTCTCCTGGACCTAATCGGAGCCCATTGATAGGATATAACTACGGTTTGAATAGGACAAGTAACTACCTAAACAGTTATGCTCAGGGTTTTAATATTAATCCGATAGGAGGCTATGGCATGAGGATGGATGGTAGATTTAGTCCACTTACTAGTGGTAGAAGCAGTTTTACCCCGTTTGGATCTAATGGTTATGGAATGGGAGTGAATTTGGAATCGCCATTGAGTCCAAACTATGGAGGAACTTCCAATTATGGGGGCAGTATAGGGTACGGTCGAATATTTAGTCCTTTCTATAGTGGTGGCAATTCAAGCAGGTACACAACTCCAATTGGCTTTAGCGGGGGCAATGCGAGAAGCGACACTCTTACGAACTCAACTTCTAGGAATGTCTGGGGAAATGGGGGACTGAATACTGCAACTAATAACCCCGTCAGCCCCGGTGCTTACTTGGGATCTGGAAGTGGGGCTTTCGGTGTTTCACTTGGAAATAGTGGCACCAATTGGGGTCCATCAGTTCCAACGCAGGGTGGAGGTGCTGCTTCCGGCTATGCTACTTGGAGCAATGTTTATGGCAGTGGAGATAGTAGCACAGGATTAGGAGGAGGAGGAGGGTATGGGAGGAACGGCGGCTCAAATGCGACCCAGTCCTCTACATTCGCTGCACCAAACAGCGTTTATGATGGACCATATGGGGACTCATACCGCAGTGGCTCTGTTTACAATGACTCTACTTGGCGGTCCGCTTCTTCTGAGGTAGATGGTTCTGGTGCATTCGGTTATGGACTTGGTGGCATTGTTTCAGATGATCCAGTGAAGAGTTCTGAGGGTTTTATTGGGAACTACAATGTAACAAGTAGACAATCTAATAGAGGAATTGCTGCTTAG 1443 0.4622 MESDLGKLFIGGISWDTDEERLKEYFGKFGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIMDKHVIDGRTVEAKKAVPRDDQQTINRQSGSMQGSPSPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKSFHELNGKLVEVKRAVPKDLSPGPNRSPLIGYNYGLNRTSNYLNSYAQGFNINPIGGYGMRMDGRFSPLTSGRSSFTPFGSNGYGMGVNLESPLSPNYGGTSNYGGSIGYGRIFSPFYSGGNSSRYTTPIGFSGGNARSDTLTNSTSRNVWGNGGLNTATNNPVSPGAYLGSGSGAFGVSLGNSGTNWGPSVPTQGGGAASGYATWSNVYGSGDSSTGLGGGGGYGRNGGSNATQSSTFAAPNSVYDGPYGDSYRSGSVYNDSTWRSASSEVDGSGAFGYGLGGIVSDDPVKSSEGFIGNYNVTSRQSNRGIAA 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30518g00004 480 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Stsc30518g00004 480 Gene3D - 6 85 IPR012677 -
Stsc30518g00004 480 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 476 - -
Stsc30518g00004 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Stsc30518g00004 480 MobiDBLite consensus disorder prediction 86 102 - -
Stsc30518g00004 480 MobiDBLite consensus disorder prediction 80 105 - -
Stsc30518g00004 480 CDD RRM2_Hrp1p 107 184 - -
Stsc30518g00004 480 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Stsc30518g00004 480 SUPERFAMILY RNA-binding domain, RBD 90 193 IPR035979 GO:0003676
Stsc30518g00004 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 173 IPR000504 GO:0003723
Stsc30518g00004 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Stsc30518g00004 480 SMART rrm1_1 7 78 IPR000504 GO:0003723
Stsc30518g00004 480 SMART rrm1_1 107 179 IPR000504 GO:0003723
Stsc30518g00004 480 Gene3D - 86 194 IPR012677 -
Stsc30518g00004 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Stsc30518g00004 480 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Stsc30518g00004 480 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30518g00004 Stsc-Chr30518 31342 34480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30518g00004 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 23.596 7.90e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30518g00004 K14411 - gmx:100788515 801.201