Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30517g00004 ATGAAGATCACTGTCATGACTGCTGATGAACAAATTCTCACTTTGGATGTTGATCCTCACGAATCTGTGGAAAACGTCAAGGCATTGCTGGAGGTTGAGACAAGTGTCCCTATTCAGCAACAGCAACTACTCTTCAATGGGAAGGAGATTAGGAATTCTGACAAGTTAAGTGCCATAGGCGTGAAGGATGACGATTTGCTTATGATGGTCTCCGGTGGCGGCGGCGGCAGTGGTGGCGGTGGTGCTGCCAGTGGAACTGCCAATGAATTGAGTGTAAATGCCGATGGATCTGCTGTAAACCCTGGTGCTTTCCAGCAGCACATAAGACGTGATTCTAATTTGATGGGCCAGCTCTTTCAGAGTGATCCGGAGTTGGCCCAAGCTATTCTTGGGAATGATCTTAATAGATTGCAGGAAGTTTTGCGAGTGCGTCATCGCCAAAGGGCAGAACTACAGCGTCAGAAAGAAGAAGAGCTTGCTCTTCTTTACGCGGATCCTTTTGATGTTGAAGCCCAGAAAAAGATTGAAGCTGCCATTCGCCAAAAAGGAATTGATGAGAACTGGGCAGCTGCACTAGAACATAATCCTGAAGGTTTTGCTAGAGTGGTTATGCTCTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTCGATAGCGGAGCCCAGTCTACCATTATATCAAAAAGTTGTGCTGAGCGCTGCGGGTTGTTGAGACTCTTAGATCAGCGTTACAAAGGTATTGCTCATGGAGTTGGTCAATCAGAAATATTAGGTCGGATACATGTAGCTCCAATCAAGATTGGGAGTATATTTTATCCTTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAGTTTCTTTTTGGGCTTGATATGCTCCGAAAGCATCAGTGTATAATCGATTTAAAAGATAATGTTTTGCGAGTTGGCGGTGGAGAAGTTTCAGTTCCATTTTTGCATGAGAAAGACATACCATCTCGGTTTCTTGACGAGGAAAAGTATAAGGAGGCTTCAAGCTCTGGCACACAAGTTACATCAGGGGGCAATAATCCATCACCAAGGGGCCAGTCTTCTGGGGGAGCTTCTGGCGACAGGTCTAAGGACTCTGAATTTGAAGCCAAAGTTGCAAAGCTTGTTGAGTTAGGATTTGAAAGAGCTGCAGTAATACAAGCTCTTAAATTATTCGATGAGAATGAGGAACAAGCAGCAGGATTTCTTTTTGGGGGCTGA 1239 0.4487 MKITVMTADEQILTLDVDPHESVENVKALLEVETSVPIQQQQLLFNGKEIRNSDKLSAIGVKDDDLLMMVSGGGGGSGGGGAASGTANELSVNADGSAVNPGAFQQHIRRDSNLMGQLFQSDPELAQAILGNDLNRLQEVLRVRHRQRAELQRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEGFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKDNVLRVGGGEVSVPFLHEKDIPSRFLDEEKYKEASSSGTQVTSGGNNPSPRGQSSGGASGDRSKDSEFEAKVAKLVELGFERAAVIQALKLFDENEEQAAGFLFGG 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30517g00004 412 Coils Coil 134 157 - -
Stsc30517g00004 412 PRINTS Ubiquitin signature 32 52 IPR019956 -
Stsc30517g00004 412 PRINTS Ubiquitin signature 11 31 IPR019956 -
Stsc30517g00004 412 SUPERFAMILY Ubiquitin-like 1 77 IPR029071 -
Stsc30517g00004 412 SMART uba_6 374 411 IPR015940 -
Stsc30517g00004 412 CDD UBA_scDdi1_like 375 410 - -
Stsc30517g00004 412 FunFam DNA damage inducible 1 homolog 2 182 329 - -
Stsc30517g00004 412 MobiDBLite consensus disorder prediction 342 367 - -
Stsc30517g00004 412 Gene3D Acid Proteases 183 329 IPR021109 -
Stsc30517g00004 412 Gene3D - 343 412 - -
Stsc30517g00004 412 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Stsc30517g00004 412 CDD RP_DDI 189 312 IPR019103 GO:0004190|GO:0006508
Stsc30517g00004 412 SUPERFAMILY UBA-like 359 412 IPR009060 GO:0005515
Stsc30517g00004 412 SUPERFAMILY Acid proteases 190 305 IPR021109 -
Stsc30517g00004 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 369 412 IPR015940 -
Stsc30517g00004 412 SMART ubq_7 1 72 IPR000626 GO:0005515
Stsc30517g00004 412 MobiDBLite consensus disorder prediction 342 371 - -
Stsc30517g00004 412 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Stsc30517g00004 412 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 409 - -
Stsc30517g00004 412 Gene3D - 1 75 - -
Stsc30517g00004 412 Pfam Aspartyl protease 182 304 IPR019103 GO:0004190|GO:0006508
Stsc30517g00004 412 Pfam UBA/TS-N domain 375 408 IPR015940 -
Stsc30517g00004 412 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30517g00004 Stsc-Chr30517 34081 40221 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30517g00004 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.263 6.44e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30517g00004 K11885 - gmx:100779464 712.605