Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30516g00010 ATGCCCGATTTGGGGAATTTGTCTCTCACCGAGACTCTTTCTCTCCCCACAGCCGCAGAGCCTCCTGTCTTAACCAATTCTCTCCACTCACCCAACCTCAAGAACCCACCGCCACCATCCAACCCCGTCGTCTACACGCGCTCTGCTCTTCGGAAAGATAGAATCCGCAGCCACAAAACTCACGGAACGGAGACTAAAGCTCCCGCCGTCAAAGCAGCTAATGGTGGTGACACCAAGGGTTTGGAGGATGGAAATGGAGTCAGAGAGTTCTCTCAGAAGAGCAACAAGATTGATTCCGAGGATCCAAATCCTGGATTCTCACTTCCCTTCCTCGTTGGCGCTCCCAAAATGATTGAATGCCTTGTTTGCCATCGTTCAGTATGCCCAGGGGATGAGCTATCTTGTTCCGTTCGTGGCTGTGGAGGAATCTACCATGTCAATTGTGCAAAAGAAGCTATGGGGATCTCGAATCCAAAAAAATTCAAGTGCTCACGACATGCATGCTTCGTTTGCAAACAAAAGAAGCAGTTGCGGTGTGTGCGTTGCGCAAATGCATTTCATGAAAAATGTGCCCCATGGCCAGAGGCTGTGGTGAGCCTAAAAGACAATCCTGGAAATGCTATTTGTTGGAGGCATCCTTCTGATTGGCGATTGGATGGAAAGCTTGAAGGTTCCACAAGTGATATACAGGAAATATTTCGTCGGTTGCCTGTTCCCTATGTCAATGAGGATTTCAAGATTGATCTTACATGGAAAGAGATGGAGACTAAGATGGAACCCCCATCATATGTGCATATACGGCGCAATTCCTACTTAGTCAAGAAGCGCAGTGAGGAAGATGATGGTGCAGGGTGCACCACTTGCAGTCCTATCTGCTCAGATGATTGTGTGTGCAGGGTGCAATATATAAGTTGCTCAAAGTCATGTCGCTGCTCAGAAAATTGCAGTAATAGGCCATTTCGCAAGGAGAAAAAGATGAAGCTGGTCAAGACCGAGCATTGTGGATGGGGAGTAGAGGCAGCTGAAAACATCAACAATGGCGAATTCATAATTGAGTATATTGGAGAAGTTATTGATGATGCTTTATGTGAAAAACGGCTTTGGGACATGAAATACGGGGGTGCACAGAATTTTTACATGTGTGAGATTCGTAAAGATTTTACAATAGATGCAACTTTCAAAGGAAATTTGGCTCGCTTCTTAAACCATGGCTGTGATCCCAACTGTGTTCTGGAGAAGTGGGAAGTAGATGGTGAAACAAGAGTTGGCGTATTTGCTGCCCGTTCAATAGAAGCGGGAGAGTCCTTAACATATGATTACAGATTTGTGCAATTTGGACCGGAGGTAAAATGCCAGTGTGGTGCCCGAAATTGTCGAGGGTTTCTAGGGGTGAAAAAGAAAATTGCCAAGTTAGATATTTGTTGGGGTTGGGGCTCTAAGCGTAAGAGAACTTCAGCTGCATGTCCTGCCATAGAAACACCTGTATGA 1488 0.4603 MPDLGNLSLTETLSLPTAAEPPVLTNSLHSPNLKNPPPPSNPVVYTRSALRKDRIRSHKTHGTETKAPAVKAANGGDTKGLEDGNGVREFSQKSNKIDSEDPNPGFSLPFLVGAPKMIECLVCHRSVCPGDELSCSVRGCGGIYHVNCAKEAMGISNPKKFKCSRHACFVCKQKKQLRCVRCANAFHEKCAPWPEAVVSLKDNPGNAICWRHPSDWRLDGKLEGSTSDIQEIFRRLPVPYVNEDFKIDLTWKEMETKMEPPSYVHIRRNSYLVKKRSEEDDGAGCTTCSPICSDDCVCRVQYISCSKSCRCSENCSNRPFRKEKKMKLVKTEHCGWGVEAAENINNGEFIIEYIGEVIDDALCEKRLWDMKYGGAQNFYMCEIRKDFTIDATFKGNLARFLNHGCDPNCVLEKWEVDGETRVGVFAARSIEAGESLTYDYRFVQFGPEVKCQCGARNCRGFLGVKKKIAKLDICWGWGSKRKRTSAACPAIETPV 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30516g00010 495 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 494 IPR025787 -
Stsc30516g00010 495 Gene3D SET domain 240 472 IPR046341 -
Stsc30516g00010 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 215 IPR013083 -
Stsc30516g00010 495 ProSiteProfiles AWS domain profile. 281 324 IPR006560 GO:0005634|GO:0042054
Stsc30516g00010 495 SMART PostSET_3 447 463 IPR003616 -
Stsc30516g00010 495 Pfam SET domain 335 440 IPR001214 GO:0005515
Stsc30516g00010 495 SUPERFAMILY SET domain 244 453 IPR046341 -
Stsc30516g00010 495 CDD SET_ASHR3-like 325 463 - -
Stsc30516g00010 495 FunFam Histone-lysine N-methyltransferase 240 473 - -
Stsc30516g00010 495 PANTHER SET DOMAIN PROTEINS 92 483 - -
Stsc30516g00010 495 SMART shorttest3 280 325 IPR006560 GO:0005634|GO:0042054
Stsc30516g00010 495 MobiDBLite consensus disorder prediction 21 87 - -
Stsc30516g00010 495 SMART PHD_3 168 213 IPR001965 -
Stsc30516g00010 495 SMART PHD_3 119 167 IPR001965 -
Stsc30516g00010 495 ProSiteProfiles Post-SET domain profile. 447 463 IPR003616 -
Stsc30516g00010 495 SMART set_7 324 447 IPR001214 GO:0005515
Stsc30516g00010 495 ProSiteProfiles SET domain profile. 324 441 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30516g00010 Stsc-Chr30516 36463 40053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30516g00010 305 462 C2H2 Transcription Factor Family AT2G23740 36.464 8.83e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc30516g00010 SET 1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30516g00010 - - zju:107425956 641.728