Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30516g00009 ATGAAGAATTGTTACTCCATGGGAAAGTCATCATCACAAGTTAACAAGATCAATAATAATAATCTTAATGCAATCAATAATGGGAATAGTGCTACTAAGGTGAAACGTACAAGGAGGAGTGTTCCTAGAGACTCTCCACCTCAGCGAAGCTCAATTTACAGAGGAGTCACTAGGCATAGGTGGACGGGAAGATATGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAGTCTCAGAACAAGAAGGGACGACAAGTCTACCTTGGTGCTTATGACGATGAAGAGGCCGCAGCACATGCTTATGATCTAGCAGCACTCAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGGTATCAAACTACCAGAACGAATTGAAGGAAATGGAGGGTCAATCAAGGGAAGAGTATATTGGATCACTAAGAAGGAAAAGCAGTGGGTTTTCCCGGGGAGTATCTAAATATAGAGGTGTTGCGAGACATCATCATAACGGTAGATGGGAGGCTCGTATAGGCAGAGTTTTCGGGAATAAATATCTCTATCTCGGAACTTATGCTACACAAGAAGAAGCTGCCACTGCCTATGACATGGCTGCAATTGAATACCGTGGACTTAACGCTGTCACCAATTTCGATCTCAGCCATTACATTAAGTGGCTTAAGCCTAACAATAATATCAACGACAATATTAATGGTAACAACAACAGGATTAGTTTTAATCTTGCTGCTGTTGCTGTTGATGACGTTAACCCTAATTGCAATAACACCAACTACACACCAAACTTCAATAATAAGAGTAAGGAACAAGAATATAGCTTCTTCAACCAAGAACCCTTATTCATTAATAATAATAATATTGGAGGAGAAGATAATAATAATAATGGAAGTAATAAGTTGGGTCAGCCTCGACCAGGTGCCACATCAGCCCTAGAACTTCTGCTTCAGTCATCCAAGTTCAAGGAAATGATGGAGATGACGTCATCAGTGGCTAATAATCATAATATTAATATTAATGATGATAATAATCCATCGACACCAGCAGAGTGTGATGAGTTGCCACAATGCAATTTCCCTGAAGACATTCAAACTTATTTTGAGTATGAAGATTCAAATAAGTATGAAGGAGGTGATCATGATACATTATTCAACGAGCTCCACTCATTTGTGCCGATGTTTCACTGCGATGATGACTTTCATAATTGA 1203 0.3932 MKNCYSMGKSSSQVNKINNNNLNAINNGNSATKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQDTILNFPVSNYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSHYIKWLKPNNNINDNINGNNNRISFNLAAVAVDDVNPNCNNTNYTPNFNNKSKEQEYSFFNQEPLFINNNNIGGEDNNNNGSNKLGQPRPGATSALELLLQSSKFKEMMEMTSSVANNHNININDDNNPSTPAECDELPQCNFPEDIQTYFEYEDSNKYEGGDHDTLFNELHSFVPMFHCDDDFHN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30516g00009 400 Pfam AP2 domain 153 204 IPR001471 GO:0003700|GO:0006355
Stsc30516g00009 400 Pfam AP2 domain 52 110 IPR001471 GO:0003700|GO:0006355
Stsc30516g00009 400 Gene3D AP2/ERF domain 52 120 IPR036955 GO:0003700|GO:0006355
Stsc30516g00009 400 Gene3D AP2/ERF domain 153 214 IPR036955 GO:0003700|GO:0006355
Stsc30516g00009 400 CDD AP2 51 120 IPR001471 GO:0003700|GO:0006355
Stsc30516g00009 400 FunFam AP2-like ethylene-responsive transcription factor 153 214 - -
Stsc30516g00009 400 CDD AP2 153 214 IPR001471 GO:0003700|GO:0006355
Stsc30516g00009 400 FunFam AP2-like ethylene-responsive transcription factor 51 120 - -
Stsc30516g00009 400 MobiDBLite consensus disorder prediction 1 51 - -
Stsc30516g00009 400 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Stsc30516g00009 400 PRINTS Ethylene responsive element binding protein signature 194 214 IPR001471 GO:0003700|GO:0006355
Stsc30516g00009 400 ProSiteProfiles AP2/ERF domain profile. 52 118 IPR001471 GO:0003700|GO:0006355
Stsc30516g00009 400 SUPERFAMILY DNA-binding domain 153 214 IPR016177 GO:0003677
Stsc30516g00009 400 SUPERFAMILY DNA-binding domain 51 120 IPR016177 GO:0003677
Stsc30516g00009 400 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 26 291 - -
Stsc30516g00009 400 SMART rav1_2 154 218 IPR001471 GO:0003700|GO:0006355
Stsc30516g00009 400 SMART rav1_2 52 124 IPR001471 GO:0003700|GO:0006355
Stsc30516g00009 400 ProSiteProfiles AP2/ERF domain profile. 154 212 IPR001471 GO:0003700|GO:0006355
Stsc30516g00009 400 MobiDBLite consensus disorder prediction 284 303 - -
Stsc30516g00009 400 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30516g00009 Stsc-Chr30516 31221 34952 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30516g00009 8 263 AP2-EREBP Transcription Factor Family AT5G57390 54.864 1.92e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Stsc30516g00009 AP2 8.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30516g00009 K09285 - gmx:100804555 494.197