Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30516g00008 ATGGGAAAGTCATCATCACAAGTTAACAAGATCAATAATAATAATCTTAATGCAATCAATAATGGGAATAGTGCTACTAAGGTGAAACGTACAAGGAGGAGTGTTCCTAGAGACTCTCCACCTCAGCGAAGCTCAATTTACAGAGGAGTCACTAGGCATAGGTGGACGGGAAGATATGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAGTCTCAGAACAAGAAGGGACGACAAGTCTACCTTGGTGCTTATGACGATGAAGAGGCCGCAGCACATGCTTATGATCTAGCAGCACTCAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGGTATCAAACTACCAGAACGAATTGAAGGAAATGGAGGGTCAATCAAGGGAAGAGTATATTGGATCACTAAGAAGGAAAAGCAGTGGGTTTTCCCGGGGAGTATCTAAATATAGAGGTGTTGCGAGACATCATCATAACGGTAGATGGGAGGCTCGTATAGGCAGAGTTTTCGGGAATAAATATCTCTATCTCGGAACTTATGCTACACAAGAAGAAGCTGCCACTGCCTATGACATGGCTGCAATTGAATACCGTGGACTTAACGCTGTCACCAATTTCGATCTCAGCCATTACATTAAGTGGCTTAAGCCTAACAATAATATCAACGACAATATTAATGGTAACAACAACAGGATTAGTTTTAATCTTGCTGCTGTTGCTGTTGATGACGTTAACCCTAATTGCAATAACACCAACTACACACCAAACTTCAATAATAAGAGTAAGGAACAAGAATATAGCTTCTTCAACCAAGAACCCTTATTCATTAATAATAATAATATTGGAGGAGAAGATAATAATAATAATGGAAGTAATAAGTTGGGTCAGCCTCGACCAGGTGCCACATCAGCCCTAGAACTTCTGCTTCAGTCATCCAAGTTCAAGGAAATGATGGAGATGACGTCATCAGTGGCTAATAATCATAATATTAATATTAATGATGATAATAATCCATCGACACCAGCAGAGTGTGATGAGTTGCCACAATGCAATTTCCCTGAAGACATTCAAACTTATTTTGAGTATGAAGATTCAAATAAGTATGAAGGAGGTGATCATGATACATTATTCAACGAGCTCCACTCATTTGTGCCGATGTTTCACTGCGATGATGACTTTCATAATTGA 1185 0.3941 MGKSSSQVNKINNNNLNAINNGNSATKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQDTILNFPVSNYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSHYIKWLKPNNNINDNINGNNNRISFNLAAVAVDDVNPNCNNTNYTPNFNNKSKEQEYSFFNQEPLFINNNNIGGEDNNNNGSNKLGQPRPGATSALELLLQSSKFKEMMEMTSSVANNHNININDDNNPSTPAECDELPQCNFPEDIQTYFEYEDSNKYEGGDHDTLFNELHSFVPMFHCDDDFHN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30516g00008 394 CDD AP2 147 208 IPR001471 GO:0003700|GO:0006355
Stsc30516g00008 394 MobiDBLite consensus disorder prediction 278 297 - -
Stsc30516g00008 394 MobiDBLite consensus disorder prediction 1 29 - -
Stsc30516g00008 394 Pfam AP2 domain 147 198 IPR001471 GO:0003700|GO:0006355
Stsc30516g00008 394 Pfam AP2 domain 46 104 IPR001471 GO:0003700|GO:0006355
Stsc30516g00008 394 ProSiteProfiles AP2/ERF domain profile. 46 112 IPR001471 GO:0003700|GO:0006355
Stsc30516g00008 394 ProSiteProfiles AP2/ERF domain profile. 148 206 IPR001471 GO:0003700|GO:0006355
Stsc30516g00008 394 FunFam AP2-like ethylene-responsive transcription factor 147 208 - -
Stsc30516g00008 394 SUPERFAMILY DNA-binding domain 147 208 IPR016177 GO:0003677
Stsc30516g00008 394 FunFam AP2-like ethylene-responsive transcription factor 45 114 - -
Stsc30516g00008 394 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Stsc30516g00008 394 PRINTS Ethylene responsive element binding protein signature 188 208 IPR001471 GO:0003700|GO:0006355
Stsc30516g00008 394 SUPERFAMILY DNA-binding domain 45 114 IPR016177 GO:0003677
Stsc30516g00008 394 SMART rav1_2 46 118 IPR001471 GO:0003700|GO:0006355
Stsc30516g00008 394 SMART rav1_2 148 212 IPR001471 GO:0003700|GO:0006355
Stsc30516g00008 394 Gene3D AP2/ERF domain 46 114 IPR036955 GO:0003700|GO:0006355
Stsc30516g00008 394 Gene3D AP2/ERF domain 147 208 IPR036955 GO:0003700|GO:0006355
Stsc30516g00008 394 CDD AP2 45 114 IPR001471 GO:0003700|GO:0006355
Stsc30516g00008 394 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 21 285 - -
Stsc30516g00008 394 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30516g00008 Stsc-Chr30516 31221 34952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30516g00008 2 257 AP2-EREBP Transcription Factor Family AT5G57390 54.864 1.76e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Stsc30516g00008 AP2 8.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30516g00008 K09285 - gmx:100804555 494.197