Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30513g00008 ATGGCGCACTCACTCACCCCTCTGTATATTGTGGTGGCTGTTCTAGTACTTGTGGTCATAGGTATTATCAGCATCATTCGTAGATTTGTGTATTGCCTCAAATGCCTAACCAGAATGATAAGGCAAACCAGTTCAGATAAGACTCTAGTCAACACACTGAGGAGCCTCCCTGGAACTCCCAGAGAGTACAGGTTTGAGGATCTGAAGAAGGCAACCAACAACTTCAACGATGTCAAGAACAAGCTAGGACAAGGTGGTTTCGGTGCTGTTTACAAAGGAACGCTCCCTAAGGACAACACTCAGGTTGCTGTCAAGAAGTTCTTGAGGGACAAGATCTATAGCACACATGATTTCTTGGCTGAGCTCACAATCATCAATTCTCTTCGCCACAAGAACCTTGTCCGCTTACTTGGATGGTGCCACAAGAATGGGATACTACTGTTAGTATATGAATACATGCCCAATGGAAGCTTAGATAATCACATTTTCTTCAAGGAAGGGGTCAAGAAAACACCATTAAGTTGGCATCTAAGATACAATAAGATCATATCAGGGTTGGTTGCTGCTTTGAACTACCTACACAACGAATGCGATCAAAAAGTGATCCACAGAGATCTCAAGGCGAGTAACATCATGCTGGACTCTGACTTCAATGCACGCTTAGGCGACTTTGGTTTGGCTCGTGCAATTGAGAATGAGAAGACATCATATGCAGATTTGCATGGTGTTCCTGGAACCATGGGCTATATTGCCCCAGAGTGCTTATACATCGGTAAGGCCACGTGCGAATCTGATGTCTATGGATTCGGCGCGGTGTTGCTTGAGGTGGTGTGTGGACAGAGGCCATGGACTAAGAATGGGGACTATTTGTTGCTAGTGGATTGGGTTTGGCACCTGTACCGCGAGGGACGGATACTAGAGGCAGTGGATCCAAGGCTAGAGAATGAGTTTGAGGGTGAAGAAGCAGAGAGGGTGCTGAAATTGGGATTAGCATGCTCTCACCCCATTGCAAGTGAGAGGCCTAAGATGCAAACAATTGTTCAGATCATATCAGGGTCAGTTCCTGTGCCTCATGTTCCACCCTTCAAGCCATCTTTTGTGTGGCCTGCTATGGATCGAGGCACTTCCTCGGGCGATCCTTCTTCAAGCGAGCCTACAACTGCGACTATAGAGTGTTCTCCCATCAACACAACCTTCTTTGCTCGTTAA 1209 0.464 MAHSLTPLYIVVAVLVLVVIGIISIIRRFVYCLKCLTRMIRQTSSDKTLVNTLRSLPGTPREYRFEDLKKATNNFNDVKNKLGQGGFGAVYKGTLPKDNTQVAVKKFLRDKIYSTHDFLAELTIINSLRHKNLVRLLGWCHKNGILLLVYEYMPNGSLDNHIFFKEGVKKTPLSWHLRYNKIISGLVAALNYLHNECDQKVIHRDLKASNIMLDSDFNARLGDFGLARAIENEKTSYADLHGVPGTMGYIAPECLYIGKATCESDVYGFGAVLLEVVCGQRPWTKNGDYLLLVDWVWHLYREGRILEAVDPRLENEFEGEEAERVLKLGLACSHPIASERPKMQTIVQIISGSVPVPHVPPFKPSFVWPAMDRGTSSGDPSSSEPTTATIECSPINTTFFAR 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30513g00008 402 Gene3D Phosphorylase Kinase; domain 1 60 152 - -
Stsc30513g00008 402 ProSiteProfiles Protein kinase domain profile. 76 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30513g00008 402 FunFam probable L-type lectin-domain containing receptor kinase S.5 153 355 - -
Stsc30513g00008 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Stsc30513g00008 402 PANTHER - 15 360 - -
Stsc30513g00008 402 CDD STKc_IRAK 82 350 - -
Stsc30513g00008 402 Gene3D Transferase(Phosphotransferase) domain 1 153 354 - -
Stsc30513g00008 402 SMART serkin_6 76 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30513g00008 402 ProSitePatterns Protein kinases ATP-binding region signature. 82 106 IPR017441 GO:0005524
Stsc30513g00008 402 Pfam Protein kinase domain 78 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30513g00008 402 FunFam probable L-type lectin-domain containing receptor kinase S.5 60 152 - -
Stsc30513g00008 402 SUPERFAMILY Protein kinase-like (PK-like) 58 382 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30513g00008 Stsc-Chr30513 39430 40956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30513g00008 59 365 Receptor kinase-like Gene Family AT3G53380 49.206 1.44e-96 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc30513g00008 Pkinase 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30513g00008 - - aip:107639957 699.893