Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30513g00003 ATGAGTGGATATGAAGCAGAAGAAGGGTCAGATAAAAAGGTCCTTTTCAGGTCCCCAAGGGATAGCACTGGACATGGCAGCCATACAGCTTCCACGGCAGCCGGTCGCTACGTGGCGAACATGAATTACAAGGGTCTGGCAGCTGGAGGAGCTAGGGGAGGTGCACCTATGGCTAGGATTGCTGTGTACAAAACATGCTGGGATTCAGGTTGCTATGATGTGGACTTGCTAGCTGCCTTTGATGATGCCATAAGAGATGGGGTTCACATTATATCACTGTCTTTGGGTCCTGAAGCTCCTCAAGGAGAGTATTTCAATGATGCCATATCAGTGGGATCCTTTCATGCTGCTAGGCATGGAGTTCTAGTGGTGGCATCAGCTGGGAATGAAGGAACTCCTGGTTCTGCTACTAACCTTGCACCTTGGATTTTCACTGTTGCTGNNNNNNNNNNTGGAAATGGTGTCAAAATCATGGGTGAAAGTCTAAGCATCTTAGAAATGAATGCCTCCAGAAGAATAATATCCGCAGCCGATGCCTTTGATGGATATTTTACTCCTTATCAATCCAGTTACTGTGTAGATAGTTCCCTGAATAAGACCAAGGCCAGAGGGAAGGTTCTGGTGTGTAGACATATAGAGAGTTCATCAGAATCAAAGTTGGTCAAAAGTAGAGTAGTGAAAGAGGCTGGTGGAGTTGGGATGATACTCATTGATGAGACAGATAAAGATGTTGCCATCCCATTTGTGATCCCTTCAGCTATTGTTGATAGGAGAACAGGCAAACACATTCTATCATACATCAACACTACAAGAAAGCCTATGTCAAGGATATTTGCAGCCAAGACAGTTCTAGGAACTCGGCCTGCACCCCGAGCAGCGGCATTCTCTTCTAAAGGCCCCAATTCCTTAACCCCAGAAGTTTTGAAGCCTGATATTACAGCTCCCGGATTAAACATTCTCGCAGCATGGTCTCCTGCAGCAGTTGGAAACATGAAGTTCAATATTATATCAGGAACTTCTATGGCTTGTCCTCATGTATCTGGAATTGCAGCATTAGTCAAAGCTGTTCATCCTTCATGGTCTCCCTCTGCTATCAAATCTGCCATCATGACAACTGCTACTATTCTGGATAAGCAGCACAAACCCATTAGAGAGGACCCTGATGGAAGAAGAGCTAATGCATTTGACTATGGATCAGGGTTTGTGAACCCCACAAGAGTCCTACATCCTGGACTTGTCTATGATTCACAGCCAGAAGATTATATTGACTTCCTATGTTCAATTGGTTATGATAAGAGGTCACTCCATCATGTTACAGGAGACAACAGCACATGTGACGGGGCATTCAAGAAACCATTCGACCTCAACTATCCATCTATTGCAGTGCCTAATCTTGAAGACAACTTTTCAGTAACACGTGTTGTCACTAATGTTGGAGAAGCAAGAAGTATATATAAATCTGTAGTGGTGTCTCCTGCTGGAGTTAATGTCACTGTTGTGCCGGACAGGTTAATCTTCAGAAGAATTGGACAGAGAATCAAGTTCACAGTGAATTTCAAAGTGGCTGCTCCTTCAAAGGGCTATACATTTGGGTTCTTGTCATGGAAGAATGGCAGGTCACAAGTCACAAGTCCTATAGCTGTCCGGGTTTCATCAGCAGGCTTCGGGTTGGTCAGATAA 1680 0.4435 MSGYEAEEGSDKKVLFRSPRDSTGHGSHTASTAAGRYVANMNYKGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHIISLSLGPEAPQGEYFNDAISVGSFHAARHGVLVVASAGNEGTPGSATNLAPWIFTVAXXXXGNGVKIMGESLSILEMNASRRIISAADAFDGYFTPYQSSYCVDSSLNKTKARGKVLVCRHIESSSESKLVKSRVVKEAGGVGMILIDETDKDVAIPFVIPSAIVDRRTGKHILSYINTTRKPMSRIFAAKTVLGTRPAPRAAAFSSKGPNSLTPEVLKPDITAPGLNILAAWSPAAVGNMKFNIISGTSMACPHVSGIAALVKAVHPSWSPSAIKSAIMTTATILDKQHKPIREDPDGRRANAFDYGSGFVNPTRVLHPGLVYDSQPEDYIDFLCSIGYDKRSLHHVTGDNSTCDGAFKKPFDLNYPSIAVPNLEDNFSVTRVVTNVGEARSIYKSVVVSPAGVNVTVVPDRLIFRRIGQRIKFTVNFKVAAPSKGYTFGFLSWKNGRSQVTSPIAVRVSSAGFGLVR 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30513g00003 559 Gene3D - 425 551 - -
Stsc30513g00003 559 Gene3D Peptidase S8/S53 domain 14 421 IPR036852 GO:0004252|GO:0006508
Stsc30513g00003 559 Pfam PA domain 190 262 IPR003137 -
Stsc30513g00003 559 FunFam Subtilisin-like protease SBT1.5 425 551 - -
Stsc30513g00003 559 Gene3D - 151 284 - -
Stsc30513g00003 559 CDD PA_subtilisin_like 152 277 - -
Stsc30513g00003 559 ProSitePatterns Serine proteases, subtilase family, serine active site. 338 348 IPR023828 -
Stsc30513g00003 559 ProSiteProfiles Serine proteases, subtilase domain profile. 1 408 - -
Stsc30513g00003 559 Pfam Fibronectin type-III domain 454 548 IPR041469 -
Stsc30513g00003 559 MobiDBLite consensus disorder prediction 8 30 - -
Stsc30513g00003 559 PRINTS Subtilisin serine protease family (S8) signature 337 353 IPR015500 -
Stsc30513g00003 559 PRINTS Subtilisin serine protease family (S8) signature 21 34 IPR015500 -
Stsc30513g00003 559 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 7 548 IPR045051 -
Stsc30513g00003 559 SUPERFAMILY Subtilisin-like 13 412 IPR036852 GO:0004252|GO:0006508
Stsc30513g00003 559 Pfam Subtilase family 9 376 IPR000209 GO:0006508|GO:0008236
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30513g00003 Stsc-Chr30513 21391 24653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30513g00003 3 552 Subtilisin-like Serine Gene Family AT3G14240 41.876 3.62e-136 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30513g00003 - - aip:107642485 1029.62