Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30509g00003 ATGGAAGCAGTTGTTCTTATTGTGAAACGATGTTTAAATAATGAAATTCATATGGAAAGGCCTAGCTTTGCTCCTCATTTGCTTACATCATTTCATGAAAGGTCATGTTGCTGCATTGATAAAGAAGATTGGGAAGGCTCCAATGTGCTCCTTTTTTATGGTTTGTGGGCCTTGTCTTCATTTGTTCATCAGTGTAGCCTTTTACAAGATCTTTCTCAGAAATTCACTACAGTGGTGACATACATTAAAGCTCAATTACTCAACAAGCTTCATGAGACTTGTACTAGCACCTGGTTAAGTCCTGGAGTGAGATGGTATGCTTCATATATTCTAAGCTATTTTGGATGCTATGGTTTCCCAAATGAATTAGCAAAAAGGATTGGTAAATCCCTTAATCAGGAAGAGTATGCAGATTTGCGACTCATTGTAGCAAATGGGGCTTCTGTCAGTGTTAATGGTGTTATTCTTGCTGTTAGATGTCCATCGCTTCTGCCTCATGAAATCTTGACTAGTAGCAAGAATTGTAAAGAGGGAACAGATAAGTATGGTGGAGAGACTATAAGAGAGGTTCGTTTATCTGCTCATGTTGATTATGAAGCATTGGTACTTTTGTTGGAATATGTTTACTTGGGATGCTTGCATGCAGAGGAAGATATGGTAAAAAAGTTGAAAATTCTTGCTAAACGCTGCAATCTACAGCCCTTTCTGCAACTGCTCTACAAACAATGTCCTAAGTGGGGCACACCTTTCCCCAGCTTGGATCTTACTTCGGCTCTCAATTCTGTTGGAAGTTCTTTTTCGGATTTCATATTGGAAGCTGAAACAAATAAACTTGTTGGGTGGACATGCAACTATTGTTCTAACTCAGTACCACATTGTCATGTTCACAAAGTTATATTGCAGTCTGGCTGTGAATATTTACAAGGTTTATTCCGATCAGGAATGCAAGAGAGCCATTCACCAGTCGTAAAGGTTTCTATTAGCTCGGAAGCATTGATTAAACTAGTACAGTGGTTTTATTCCAATAATCTGCCAAATCCTCCCTCTGGATGTTTGTGGGATAATATGGATGATGAAGAAAAGCTATTCAATCTGCAACCATATGTAGAACTTAATTGGCTTGCTGAGTTTTGGATGTTGGAAAGTATTCAGGAAGCTAGTTGGAATGTGATTGTGTCTTGCCTTGATTCTGCCAGGCACTTATCTGTTAGGATAATCAAAATGGCACACAATCTTTCTTTGTGGAAGTTGGTTGACATTGCAGCAAATTTCATGGCTCCTTCATATCGTCAATTACGAGATTCTGGTGATCTTGAAGAATTTGATGAAGCTCTAGTTCACTTAATTTATTCTGCTTCTATTCGGTTTGCACAAGAAGGTGGAAATTGTTCTAGGTGA 1398 0.3856 MEAVVLIVKRCLNNEIHMERPSFAPHLLTSFHERSCCCIDKEDWEGSNVLLFYGLWALSSFVHQCSLLQDLSQKFTTVVTYIKAQLLNKLHETCTSTWLSPGVRWYASYILSYFGCYGFPNELAKRIGKSLNQEEYADLRLIVANGASVSVNGVILAVRCPSLLPHEILTSSKNCKEGTDKYGGETIREVRLSAHVDYEALVLLLEYVYLGCLHAEEDMVKKLKILAKRCNLQPFLQLLYKQCPKWGTPFPSLDLTSALNSVGSSFSDFILEAETNKLVGWTCNYCSNSVPHCHVHKVILQSGCEYLQGLFRSGMQESHSPVVKVSISSEALIKLVQWFYSNNLPNPPSGCLWDNMDDEEKLFNLQPYVELNWLAEFWMLESIQEASWNVIVSCLDSARHLSVRIIKMAHNLSLWKLVDIAANFMAPSYRQLRDSGDLEEFDEALVHLIYSASIRFAQEGGNCSR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30509g00003 465 Gene3D Potassium Channel Kv1.1; Chain A 252 435 IPR011333 -
Stsc30509g00003 465 SUPERFAMILY POZ domain 293 391 IPR011333 -
Stsc30509g00003 465 PANTHER OS06G0674800 PROTEIN 3 460 IPR044953 -
Stsc30509g00003 465 Pfam BTB/POZ domain 293 347 IPR000210 GO:0005515
Stsc30509g00003 465 Gene3D Potassium Channel Kv1.1; Chain A 119 243 IPR011333 -
Stsc30509g00003 465 CDD BTB_POZ_ZBTB_KLHL-like 266 344 - -
Stsc30509g00003 465 ProSiteProfiles BTB domain profile. 267 348 IPR000210 GO:0005515
Stsc30509g00003 465 SMART BTB_4 137 247 IPR000210 GO:0005515
Stsc30509g00003 465 SMART BTB_4 267 395 IPR000210 GO:0005515
Stsc30509g00003 465 SUPERFAMILY POZ domain 118 238 IPR011333 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc30509g00003 BTB 8.9e-06 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30509g00003 - - mtr:25487018 696.812