Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30509g00001 ATGGCCAAACCAGGGCGAGCCCGTCGCTCTCCGCCCTCGGGCTCCGGTTCCGCCTCCTCCTCCCGCTCCCGTTCCTCGTCCCCTTCCGATTCTCGCTCTTCCTCCCGCTCTCGCTCCCTCTCTCGATCCCGTTCTCCCTCTCGCTCCAGATCCTTCTCTTCCTCCTCCTCCTCCTCCCCCTCTCGCTCCTCCCGAAGCCGTAGCCGTAGCCCTCCCCCTCAGCGCCGCAGAAGTCCCCCTGAAGCAGCCAGACGAGGTCGATCTCCTCCACCTCAGTCTAGAAAAGCTTCTCCTCCTCCAAGGAAACCTTCTCCTGTACGTGAATCACTTGTTCTTCATGTAGAAAAGCTCAGCAGGAATGTCAATGAAGGCCATTTGAAGGAAATTTTCAGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCAATGGATCGAACTGTTAATCTTCCAAAAGGATATGGATATGTGCAGTTCAAGACAAGAGCAGATGCTGAAAAAGCTTTATTGTACATGGATGGTGCCCAAATAGATGGGAATGTTGTTAAGGCAAGATTTACACTACCTCCTAGACAGAAAGTTTCATCACCACCAAAAGCTTCTGCTGTTGCTCCAAAGAGAGATGGCCCTAGGACTGATAATGCTAGTGCAGATGCTGAAAAGGATGGGCCAAAGCGGCCTAGAGAATCTCCTCGGAGAAAGCCTCCTTCCTCGCCACGGAGGAGATCTCCTGTGCCTCGAAGAGTTGGATCTCCAAGGCGACCAGATTCTCCTCGCCGTCGTGCAGATTCTCCAATTCGTCGTCGATTGGACTCCCCTTATCGTCGTGGTGACACACCTCCTAGGAGGAGGCCTATATCCCCTGGAAGAGGCCGTTCTCCGTCTCCACCAAGGCGCCTTAGATCCCCTGCAAGGGTCTCGCCTAGAAGGGTGCGGGGAAGTCCAGGTCGCAGACGTTCCCCTCCTATTAGGCGCCGTTCACCACCACCTAGACGAGCTCGTAGTCCTCCTAGAAGGTCTCCGATAAGTCGTAGACGGAGTCGCTCACCAATACGTAGACGCTCACGCTCTAGATCATTCTCACCTCGAAGAGGTCGACCACCTGTAAGACGTGGGAGGTCTTCATCCTATTCCGACTCGCCAAGTCCACGCAAGGTATCCCGGAGATCGAAGAGTCGCAGTCGCAGCCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAACAGCAGCAGCAGCAGTTCACCACCCCCACCTCGCAAACCCTAG 1263 0.5487 MAKPGRARRSPPSGSGSASSSRSRSSSPSDSRSSSRSRSLSRSRSPSRSRSFSSSSSSSPSRSSRSRSRSPPPQRRRSPPEAARRGRSPPPQSRKASPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKTRADAEKALLYMDGAQIDGNVVKARFTLPPRQKVSSPPKASAVAPKRDGPRTDNASADAEKDGPKRPRESPRRKPPSSPRRRSPVPRRVGSPRRPDSPRRRADSPIRRRLDSPYRRGDTPPRRRPISPGRGRSPSPPRRLRSPARVSPRRVRGSPGRRRSPPIRRRSPPPRRARSPPRRSPISRRRSRSPIRRRSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSRSPRRPLRGRGSSNSSSSSSPPPPRKP 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30509g00001 420 Gene3D - 6 196 IPR012677 -
Stsc30509g00001 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 182 IPR000504 GO:0003723
Stsc30509g00001 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Stsc30509g00001 420 MobiDBLite consensus disorder prediction 302 369 - -
Stsc30509g00001 420 SUPERFAMILY RNA-binding domain, RBD 96 197 IPR035979 GO:0003676
Stsc30509g00001 420 SMART rrm1_1 111 184 IPR000504 GO:0003723
Stsc30509g00001 420 CDD RRM_RNPS1 112 184 IPR034201 -
Stsc30509g00001 420 MobiDBLite consensus disorder prediction 12 68 - -
Stsc30509g00001 420 MobiDBLite consensus disorder prediction 251 284 - -
Stsc30509g00001 420 MobiDBLite consensus disorder prediction 210 235 - -
Stsc30509g00001 420 MobiDBLite consensus disorder prediction 1 109 - -
Stsc30509g00001 420 MobiDBLite consensus disorder prediction 187 420 - -
Stsc30509g00001 420 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 269 388 - -
Stsc30509g00001 420 FunFam Serine/arginine-rich splicing factor SR45 2 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30509g00001 Stsc-Chr30509 2111 8088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30509g00001 112 185 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 7.89e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30509g00001 K14325 - gmx:100783566 254.603