Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30508g00008 ATGATGCTACAACATTCAAACATTTCCATAGAACAACCTTTTCTGCTTCTGATTCTGGTTCTTCTCTTCCCTCAAACTGCAACATCTGATCTACATTCAGAAAAGCAAGCTCTCCTTGATTTTGCATCAGCATTTCACCATGGCAAAAAGGTAAACTGGAACATAAACACCTCAATCTGCAATTCATGGAATGGAGTTACCTGCAATCCCAATGGCACACATGTAATTTCAGTGAGGCTACCAGGTGTTGGTTTGAGAGGTTCTCTCCCACCAAACACCATTGGTAACCTCAATGGCCTCACTAGTCTTAGTCTAAGGTCCAACACATTGAGTGGGAAAATCCCAAATGACATTCTTGCCCTTCATTCCTTAAGGTTTATGTATCTTCAACATAACAATTTCTCAGGTGAATTGCCAAGTTTTCTTCCACCTAGGCTTGTGTTTCTTGATTTGTCACATAACTCTTTCAATGGAGAGATTCCAAACTCAATCCAAAGTTTGACTAATCTAACTGGTTTGTTCCTCAAGAACAATTCACTTATAGGGCCTATTCCTAATGTTACCCTTCCTAGCCTTAAGGATTTGGATTTGAGCTTTAACAACCTTAATGGTTCAATTCCTTTAGCATTTCAAAAGTTTCAATCTTCATCATTTGATGGGAATTTCATGCTATGTGGACCACCTTTGAGAAAACAATGTTCTTCATCAAGTCCTGCTACTAGTCCAATGCTGTCTCCACAAATAGTATCTCAAAATTCAAGTGATGTTTCCAAGAAGAAGCCGAGTCTCAGCGGGGTGATCGCAGTTGCTTTGGGCGGTTTCGGACTACTTTTCCTGCTAGTTCTGATGCTGGTGTTGTGCTGTCTTAAGAAGAGAGTTGGTGAACAAAATGAGGCACCAAAAGAGAGTAAACTTGATGAGAAGCTTAGGGAGGATTTTGGGAGTGGTGTGCAAGAGCCTGAGAAGAACAAGCTGGTGTTTTTCGGAGGGTGTTCTTATAACTTTGATCTTGAAGATTTGTTAAGAGCTTCAGCTGAAGTTCTTGGTAAGGGAAGTTGTGGAACAACATATAAGGCAATCTTGGAAGAAGGGACAGTAGTTGTTGTGAAGAGGCTGAAGGAAGTTGCAGTTGGGAAGAGAGAATATGAGCAGCAAATGGAAATTGTGAGAAAGCTTGATCAGCATCCAAATGTTGTTCCACTTAGTGCTTACTATTATTCCAAGGATGAGAAGCTTGTGGTTTATGATTACCTACCATTTGGAAGCTTTTCCAAGTTACTGCATGGAACAAGGGAAACGGGAAGAAATCCACTAGATTGGGACACCAGATTGAAGATAGTGCTTGGAGCTGCTAAGGGTGTTGCTCATATCCACTCTGCCAGTGGAAGGAAATTTGTCCATGGCAATATAAAATCATCTAATGTGCTCCTCTCAGGTGATCTACAAGGCTGCATATCAGATTTCGGCTTAGCTCCTCTAACAAGTTTCTCAGCCTCCATCAGGAGTCCAGGATACTTAGCCCCGGAGGTTATCGAGACCCGAAAATCCACACAAAAATCTGATGTGTACAGCTTCGGCGTTCTCCTTCTCGAGATGTTGACCGGCAAGACACCGGTTCAGTATTCAGGGCACGATGATGTGGTTGATCTTCCGAGATGGGTTCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGCTAATGAGGTATCCAAATATTGAAGAAGAATTGGTGCAAATGCTGCAACTTTCAATGGCATGTGTTGCAGTGGTTCCTGACACAAGACCCTCAATGGAGGAAGTTGCAAGGGTTATTGAAGAAATCATAGGATCCTATTATGAGAACCAGACAACAACATTATCAGAAAACAAGTTCAAGGGATCTCATGCTTTCATTCCACACTACTGA 1920 0.4177 MMLQHSNISIEQPFLLLILVLLFPQTATSDLHSEKQALLDFASAFHHGKKVNWNINTSICNSWNGVTCNPNGTHVISVRLPGVGLRGSLPPNTIGNLNGLTSLSLRSNTLSGKIPNDILALHSLRFMYLQHNNFSGELPSFLPPRLVFLDLSHNSFNGEIPNSIQSLTNLTGLFLKNNSLIGPIPNVTLPSLKDLDLSFNNLNGSIPLAFQKFQSSSFDGNFMLCGPPLRKQCSSSSPATSPMLSPQIVSQNSSDVSKKKPSLSGVIAVALGGFGLLFLLVLMLVLCCLKKRVGEQNEAPKESKLDEKLREDFGSGVQEPEKNKLVFFGGCSYNFDLEDLLRASAEVLGKGSCGTTYKAILEEGTVVVVKRLKEVAVGKREYEQQMEIVRKLDQHPNVVPLSAYYYSKDEKLVVYDYLPFGSFSKLLHGTRETGRNPLDWDTRLKIVLGAAKGVAHIHSASGRKFVHGNIKSSNVLLSGDLQGCISDFGLAPLTSFSASIRSPGYLAPEVIETRKSTQKSDVYSFGVLLLEMLTGKTPVQYSGHDDVVDLPRWVQSVVREEWTAEVFDLELMRYPNIEEELVQMLQLSMACVAVVPDTRPSMEEVARVIEEIIGSYYENQTTTLSENKFKGSHAFIPHY 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30508g00008 639 FunFam pollen receptor-like kinase 1 311 417 - -
Stsc30508g00008 639 SUPERFAMILY L domain-like 43 230 - -
Stsc30508g00008 639 MobiDBLite consensus disorder prediction 235 258 - -
Stsc30508g00008 639 Gene3D Ribonuclease Inhibitor 144 235 IPR032675 -
Stsc30508g00008 639 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 418 623 - -
Stsc30508g00008 639 PANTHER OS05G0588300 PROTEIN 15 614 - -
Stsc30508g00008 639 Pfam Leucine rich repeat 88 134 IPR001611 GO:0005515
Stsc30508g00008 639 FunFam Leucine-rich repeat receptor-like protein kinase 33 143 - -
Stsc30508g00008 639 Gene3D Ribonuclease Inhibitor 32 143 IPR032675 -
Stsc30508g00008 639 Gene3D Phosphorylase Kinase; domain 1 311 417 - -
Stsc30508g00008 639 SUPERFAMILY Protein kinase-like (PK-like) 346 608 IPR011009 -
Stsc30508g00008 639 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Stsc30508g00008 639 CDD STKc_IRAK 348 612 - -
Stsc30508g00008 639 ProSiteProfiles Protein kinase domain profile. 342 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30508g00008 639 PRINTS Leucine-rich repeat signature 146 159 - -
Stsc30508g00008 639 PRINTS Leucine-rich repeat signature 189 202 - -
Stsc30508g00008 639 Pfam Protein kinase domain 345 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30508g00008 639 Gene3D Transferase(Phosphotransferase) domain 1 419 633 - -
Stsc30508g00008 639 FunFam Leucine-rich repeat receptor-like protein kinase 144 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30508g00008 Stsc-Chr30508 37071 39679 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30508g00008 16 627 Receptor kinase-like Gene Family AT5G58300 59.385 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc30508g00008 Pkinase 2.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30508g00008 - - var:108321341 865.144