Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30508g00004 ATGAGGAGCATCAATTGCCATGTTCCATTGTTTGTTTGCATGTTGTTCTTAGGGTTCTTAGCTACTGAGGTTGTGGTAGGACAAGATTATAAGCCTGCTGATAACATTCTATTGAGTTGTGGTGGCCCTCCAACTAGTAAAGATTCTGATGGAAGGACATGGTATAGTGATGCTGGTTCCAAGTTTGCATCATCCAAGGGGAACACCAGTGTGTCGCCGGCGGCGACTCAGGACCCTGCTGTCCCTACTGTGCCATACATGAATGCCAGGGTGTTCCATTCGCCTTTTACATACTCCTTTCCGGTGGCGTCCGGGTGGAAGTTCCTCCGGCTGTACTTTTACTCGGCGTCCTACAGCGGCCTCAATGCCAGCGACGCGTTGTTCTCGGTGACTTCGCAGTCCTATACCCTGCTCAGGAACTTTAGTGTGTCACAAACCACTCTGGCTCTGAATTATGCCTACATTCTGAAGGAGTATTGCATTAATGTTGATGGGGATACCTTGAATGTGACTTTCGCACCGTCCACCAATAAGTCGAATGCTTATGCTTTTGTTAATGGGATTGAGGTTGTGTCCATGCCTGATATCTATACTGAAACTGATGGTTCTACCATGATTGTTGGTACCAATACTCCTTTCACCATTGACAACAGCACTGCACTTGAGAATCTCTATAGGTTGAATGTGGGTGGAAATGATATCTCGCCTTCCCAAGATACTGGTCTGTTTAGGTCATGGTCTGATGATGTACCCTTCCTATTTGGGGCAGCTTTTGGAGTGACTGAGCCTGCTGATCCGTCGGTGAAGATTCGGTATCCTCCAGGCACGCCGAGTTATATTGCACCGCAGGATGTCTACAGTACTGCCAGATCAATGGGGCCGGATCCCAACATCACCATCACCTACAACTTGACTTGGATTTTCTCTATTGACTCCGGGTTTTCGTATCTTGTGAGGCTCCATTTTTGTGAGGAATCGTCGATTATAAACAAGGTCAATCAGAGAGTGTTTGATATACTTCTCAACAATCAAACTGCCGAGTCCGGAGCTGATGTTATTGCGATGGCACAGGCAGAATACGGCAGTTCATATACAAATGGAGTTGCAATGCATAAAGATTTTGTTGTGTTTGTTCCCAATGGAGAGCCGCGCCAGGATCTTTGGCTCGCATTACATCCTGATAAAACTATGAAGCCTAACTATTATGATGCAATCTTGAATGGAGTGGAGATATTCAAAATTAGTGATGCTAAGAATAATCTGGCTGGGACAAATCCTATTCCTCCTCCGGTGCAAGACGACATTGACCCGGCTTTGGCTAGAAGTCATCACGCTACATCAAAGAATCATACCGGCATAATTGCTGGAGGGGTTGCTGGAGGAATTGTTGTAGCACTTGTCATTGGACTATTTGCTTTCTTTGTATCTCGTCGTCGCAGGCAAGGAAAGGAGCCAAGTTCAAGTGATGGGCCATCTGGGTGGCTTCCTCTTTCTCTGTACGGCAATTCGCACTCTGCAGCTTCTGCCAAGACCAACACAACTGGAAGCTATGCATCCTCTCTGCCATCGAACCTTTGCCGTCACTTCTCATTTGCTGAAATCAAGGCCGCCACGAACAACTTTGATGAGGCTTTGCTTCTTGGTGTGGGAGGATTCGGAAAGGTTTACAAAGGTGAGGTTGATGGCGGGTCAACCAAAGTAGCAATCAAGCGTGGGAATCCACTGTCTGAGCAAGGAGTGCACGAGTTCCAAACCGAGATTGAAATGCTCTCTAAGCTCCGCCATCGCCACCTTGTCTCCCTGATTGGCTATTGTGAAGAAAACACCGAAATGATTCTCGTCTATGACTACATGGCCCATGGAACACTCAGGGAGCATCTATACAAGACACAGAAGCCTCCACTGCCATGGAAGCAAAGGCTTGAGATCTGCATTGGCGCTGCTCGGGGTTTACACTATCTTCACACTGGTGCCAAGCACACTATCATCCACCGTGACGTGAAGACAACAAACATTTTACTTGATGAGAAGTGGGTGGCCAAGGTTTCCGATTTCGGCTTGTCAAAAACTGGCCCAACATTGGATAACACACACGTAAGCACTGTCGTTAAGGGTAGTTTCGGATACTTGGATCCAGAATACTTCAGGAGGCAGCAGCTCACTGACAAGTCTGATGTTTACTCATTCGGGGTGGTTCTCTTCGAGATACTATGCGCTCGGCCGGCTCTAAACCCGACCCTTGCCAAGGAGCAAGTCAGTCTAGCCGAGTGGGCGGCTTACTGCTACAGAAAAGGCAATCTTGACCAAATTGTGGATCCTTACCTCAAGGGCAAGATAGCTTTTGAATGCTTCAAGAAATTTGCTGAGACTGCAATGAAGTGTGTGAACGACCAAGGCATCGAACGGCCATCCATGGGCGATGTCTTGTGGAACCTCGAGTTTGCTTTGCAGCTGCAAGAAAGCGCGGAGGAGAGTGGCAAGGGGTTCGGCGGGATACTCAACGAGGAGGAGCCGCTATGCTCGGATTCTAAAGGGAAGAAGGAATCTGATGCATTGCCATTGTATGATGGCAACACTGATTCAAGAAGCAGTGGCATGAGCATGAGCATTGGTGGTAGAAGCTTAGCAAGTGAAGATTCTGATGGATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAGAAATTGA 2733 0.4629 MRSINCHVPLFVCMLFLGFLATEVVVGQDYKPADNILLSCGGPPTSKDSDGRTWYSDAGSKFASSKGNTSVSPAATQDPAVPTVPYMNARVFHSPFTYSFPVASGWKFLRLYFYSASYSGLNASDALFSVTSQSYTLLRNFSVSQTTLALNYAYILKEYCINVDGDTLNVTFAPSTNKSNAYAFVNGIEVVSMPDIYTETDGSTMIVGTNTPFTIDNSTALENLYRLNVGGNDISPSQDTGLFRSWSDDVPFLFGAAFGVTEPADPSVKIRYPPGTPSYIAPQDVYSTARSMGPDPNITITYNLTWIFSIDSGFSYLVRLHFCEESSIINKVNQRVFDILLNNQTAESGADVIAMAQAEYGSSYTNGVAMHKDFVVFVPNGEPRQDLWLALHPDKTMKPNYYDAILNGVEIFKISDAKNNLAGTNPIPPPVQDDIDPALARSHHATSKNHTGIIAGGVAGGIVVALVIGLFAFFVSRRRRQGKEPSSSDGPSGWLPLSLYGNSHSAASAKTNTTGSYASSLPSNLCRHFSFAEIKAATNNFDEALLLGVGGFGKVYKGEVDGGSTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENTEMILVYDYMAHGTLREHLYKTQKPPLPWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDNTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEILCARPALNPTLAKEQVSLAEWAAYCYRKGNLDQIVDPYLKGKIAFECFKKFAETAMKCVNDQGIERPSMGDVLWNLEFALQLQESAEESGKGFGGILNEEEPLCSDSKGKKESDALPLYDGNTDSRSSGMSMSIGGRSLASEDSDGLXXXXXXXXXXXXXXXXXXXXXXXXSRN 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30508g00004 910 MobiDBLite consensus disorder prediction 827 889 - -
Stsc30508g00004 910 FunFam FERONIA receptor-like kinase 219 415 - -
Stsc30508g00004 910 SUPERFAMILY Protein kinase-like (PK-like) 515 815 IPR011009 -
Stsc30508g00004 910 SMART serkin_6 541 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30508g00004 910 FunFam FERONIA receptor-like kinase 35 194 - -
Stsc30508g00004 910 ProSitePatterns Protein kinases ATP-binding region signature. 547 570 IPR017441 GO:0005524
Stsc30508g00004 910 ProSiteProfiles Protein kinase domain profile. 541 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30508g00004 910 Gene3D - 220 415 - -
Stsc30508g00004 910 Gene3D - 36 194 - -
Stsc30508g00004 910 PANTHER OS03G0124300 PROTEIN-RELATED 11 483 IPR046957 GO:0004672
Stsc30508g00004 910 Pfam Malectin-like domain 38 414 IPR024788 -
Stsc30508g00004 910 Pfam Protein tyrosine and serine/threonine kinase 547 808 IPR001245 GO:0004672|GO:0006468
Stsc30508g00004 910 MobiDBLite consensus disorder prediction 856 874 - -
Stsc30508g00004 910 MobiDBLite consensus disorder prediction 839 853 - -
Stsc30508g00004 910 Gene3D Phosphorylase Kinase; domain 1 502 617 - -
Stsc30508g00004 910 Gene3D Transferase(Phosphotransferase) domain 1 618 829 - -
Stsc30508g00004 910 CDD STKc_IRAK 547 813 - -
Stsc30508g00004 910 Coils Coil 883 883 - -
Stsc30508g00004 910 FunFam Receptor-like protein kinase FERONIA 513 617 - -
Stsc30508g00004 910 FunFam Receptor-like protein kinase FERONIA 618 828 - -
Stsc30508g00004 910 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30508g00004 Stsc-Chr30508 19007 22635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30508g00004 21 883 Receptor kinase-like Gene Family AT3G51550 72.696 0.0 1260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc30508g00004 Malectin_like 1.4e-40 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30508g00004 - - gmx:100499644 1439.86