Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30508g00001 ATGGCTGCTCTGATCAGCACAACTTCAACTACACTTCTTCAACACAATCATCATACAGTATGCTTTTCTCCTCTGAAAACCACCACCCCATATACCATTTTCCTGTCAACAAATCGTTTCAAGAGTAACTACATTAACTCCATAAAGTGCAATGCATTCTTGGATAACAACATCATCCCCAAAGAGTTATTGTTGGAGTTGGACTACACACTAGTGAAGTTCCAGAGTGTAACTGAAGACTTATCAGGTTTACAAAAATGGGGGTTTCTTGCTTTTGCTGGGCTGGCATGGATTTACTTAACTGCAAGGCCTGGTGTTCTTGTTGGGGCCATTGATGCATACCTTATGGCTCCAATTCAAATGGTTTTGGATAGTTTATTTGGAAGGAGAAGTCTCAAAGGGAGTGATTTTGTGATTGGAGATAAATTAGGAGAAGGGTCATTTGGTGTTGTTTATTCAGGTGTTTTGGTCCCAAGGAATGTAAATAGTGCAGAAGAGAAGATACAGAAGAGTGGTAATAAGATTAAGGGGAAGGTACTAACAAAGTTGGATCCAAAAGCCAAGGACAAAGTCATTCTCAAGAAGGTGAAAGTTGGAATTGAAGGAGCTAAAGAATTTGGTGAATATGAGGAGTGGTTCAATTACAGGCTCTCCAGAGCAGCTCCAGAAACTTGTGCTAAGTTCCTTGGAAGTTTTGTAGCTGATAAAACCAATTCACTTTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGGCCGTTCTCTCGCTGATTACATCACGGATCGAAACTTTCCTTCGAACTTGGAATCTGTCATGTTTCGACGAGCCTTGCAAGGGATAGACTCGTCGAAAAGAGATGCCTTGATCATCAAGCAAATAATGCGCCAAATGGTTACTTCACTTAAGAAGATTCATGACACAGGCATTGTTCACAGGGATATAAAGCCTGCCAACTTGGTAGTTACCAAGCAGGGACAGATCAAACTTATCGATTTCGGTTCAGCTACCGATCTGCGAATCGGTAAGAATTATGTTCCCATTTTTAACCCTTTGGATCCTGACTATTGTCCCCCAGAATTGTATGTGCTACCTGAAGAAACTACTAGTCTTCCACCGGAGCCAATTGCAGCTTTTCTTTCACCAATATTGTGGCAGTTGAAAAGTCCTGATTTATTTGACATGTATTCTGCTGGGATTATACTCTTGCAAATGGCAATACCAACTCTAAGGTCTGCATCTGCTCTGAAGAATTTCAATTTGGAATTAAGGAACTGTGGATACAATCTCAAGAAATGGCGAGGCTTTACTCGCGGCCGGTTTGATTTCCAGATCCTCGACGAAGACTCCGGTAGAGGTTGGGACTTAGCAACCAAGCTTATCTCAAAGAGGAATTCCCCGGCCAGTGGACGCTTATCGGCTGCCGCAGCTTTGAGGCATCCTTATTTCCTTCTAGGTGGTGATCAGGCAGCTGTAGTTCTTTCAAAATTAAGCTTCAGCACAAGGTGA 1515 0.4218 MAALISTTSTTLLQHNHHTVCFSPLKTTTPYTIFLSTNRFKSNYINSIKCNAFLDNNIIPKELLLELDYTLVKFQSVTEDLSGLQKWGFLAFAGLAWIYLTARPGVLVGAIDAYLMAPIQMVLDSLFGRRSLKGSDFVIGDKLGEGSFGVVYSGVLVPRNVNSAEEKIQKSGNKIKGKVLTKLDPKAKDKVILKKVKVGIEGAKEFGEYEEWFNYRLSRAAPETCAKFLGSFVADKTNSLFTKGGKWLVWKFEGGRSLADYITDRNFPSNLESVMFRRALQGIDSSKRDALIIKQIMRQMVTSLKKIHDTGIVHRDIKPANLVVTKQGQIKLIDFGSATDLRIGKNYVPIFNPLDPDYCPPELYVLPEETTSLPPEPIAAFLSPILWQLKSPDLFDMYSAGIILLQMAIPTLRSASALKNFNLELRNCGYNLKKWRGFTRGRFDFQILDEDSGRGWDLATKLISKRNSPASGRLSAAAALRHPYFLLGGDQAAVVLSKLSFSTR 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30508g00001 504 ProSiteProfiles Protein kinase domain profile. 137 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30508g00001 504 Gene3D Transferase(Phosphotransferase) domain 1 278 487 - -
Stsc30508g00001 504 Gene3D Phosphorylase Kinase; domain 1 125 252 - -
Stsc30508g00001 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 312 324 IPR008271 GO:0004672|GO:0006468
Stsc30508g00001 504 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 68 503 - -
Stsc30508g00001 504 Pfam Protein kinase domain 292 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30508g00001 504 SMART serkin_6 137 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30508g00001 504 SUPERFAMILY Protein kinase-like (PK-like) 133 486 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30508g00001 Stsc-Chr30508 356 2745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30508g00001 225 357 MAP Kinase Kinase Gene Family AT4G29810 26.087 2.90e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Stsc30508g00001 Pkinase 4.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30508g00001 - - gmx:100795624 736.102