Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30507g00003 ATGGAGGGGATGTTGAGCCTCAACACTGAAGCAAAAGCAAGTGATGAAAATCCCAAGCAGCACTTTTCTCTTGGAAATTTTGCGCAGAGTTATCCTCCTAACTTTCCCAGAAAGGTATTGGCAGAGATAATAGGAACATATCTGTTGGTGTTTGTGGGAAGTGGTTCAGCGGGGCTTAGTGCCATTGATGAAAACAAGGTATCAAAATTGGGAGCTTCACTTGCAGGAGGCTTCATTGTGACGATTATGATCTATTCCATTGGACACATCTCAGGGGCACATATGAATCCAGCTGTTTCCTTAGCTTTTGCCACCATCAACCATTTTCCTTGGAAACAGGTACCATTTTATATTGCAGCCCAACTAACAGGAGCAATATCTGCTTCATACACACTGAGAGTGTTGCTTGAACCATCAACACAAATTGGTGCCACGTCACCCTCAGGGTCAAACATTCAAGCACTTGTCATGGAAATTGTGGCCACATTCACCATGGTCTTCATATCTGCTGCTGTTGCCACTGACCCTAAAGCTATTGGTGAGCTATCAGGTGTAGCAGTAGGTTCTTCAGTTAGCATAGCAAGCATTGTAGCTGGACCAATATCAGGGGGATCAATGAACCCAGCAAGGTCATTAGGTCCTGCAATTGCAACATCATCTTATAAGGGTATTTGGGTCTATTTTGTTGGACCAATCACTGGGGCACTGTTAGGGGTATGGTCTTACAGTGTGGTTCAGGACATACATAATAAGCCACCACCACCTCCTCCTTCTTCTTCTTCTGCATTGTTGGGCCAGAGAATCATTAGTGAAGCTGAGCATGTTGGTAACAAAGACAACTTCAGCTCTGTGTGA 855 0.4444 MEGMLSLNTEAKASDENPKQHFSLGNFAQSYPPNFPRKVLAEIIGTYLLVFVGSGSAGLSAIDENKVSKLGASLAGGFIVTIMIYSIGHISGAHMNPAVSLAFATINHFPWKQVPFYIAAQLTGAISASYTLRVLLEPSTQIGATSPSGSNIQALVMEIVATFTMVFISAAVATDPKAIGELSGVAVGSSVSIASIVAGPISGGSMNPARSLGPAIATSSYKGIWVYFVGPITGALLGVWSYSVVQDIHNKPPPPPPSSSSALLGQRIISEAEHVGNKDNFSSV 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30507g00003 284 CDD MIP 37 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30507g00003 284 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Stsc30507g00003 284 Gene3D Glycerol uptake facilitator protein. 5 252 IPR023271 -
Stsc30507g00003 284 Pfam Major intrinsic protein 34 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30507g00003 284 SUPERFAMILY Aquaporin-like 30 255 IPR023271 -
Stsc30507g00003 284 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30507g00003 284 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30507g00003 284 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30507g00003 284 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30507g00003 284 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30507g00003 284 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30507g00003 284 PANTHER AQUAPORIN NIP2-1 20 247 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30507g00003 Stsc-Chr30507 44828 48990 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30507g00003 37 279 Major Intrinsic Protein MIP AT5G37820 46.122 2.16e-68 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30507g00003 K09874 - gmx:100788071 348.591