Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30507g00001 ATGGACATAGCAGCACAAACAACAACAATCAACAACAACAATAATAGCACAACTCCAACAAAATCATCACCACCAACTGAAGAACATGAAACTGAAACACCAACTAGGATTATCCAAAACACTACTAGTGCCACAATAACAACCATACCCAACACCACAACACCAACAAAGGCTTTAACTTTCTCAAATGGGGTTCTAAAACGCCACCACCCACACCCTATCTCCGCCGCCAACCACCTCGTTCTATACAAAGAATGCTTGAAGAACCACGCCGCCGCTCTCGGCGGCCACGCCCTCGACGGCTGTGGGGAGTTCATGCCTGCACCCACTGCCACCGCCGGCGACCCTACATCCATCAAGTGTGCAGCCTGCGGCTGCCACCGCAACTTCCACCGCCGTGAGCCGGAGGACCCGCTAATCTCCTCCGCCTTCGAGTTTCATTCACAAAACCGCCACCACCCTCCACCACCACCTCCTCCACCGCCTCACCGGAGCCCTAACTCGGCCTCCCCGCCGCCGATCTCGTCCGCTTACTATCACCATCCGTCAGCAGCACCTCACATGCTTCTCGCCCTCTCAGGAGTTGGCATCGCGGCGGCGCCGGAGAGCACGGCGACTCCAATTTCCGCCGCCGCAGCTCTAGCTTCCCCTCGGAAGAGGTTTAGGACGAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCAGAAGTTCGCAGAGCGTGTTGGGTGGAAGATGCAGAAGAGAGACGATGATTTGGTTCAAGAGTTTTGCAGCGAGGTTGGTGTTGATCGTGGTGTTCTCAAAGTATGGATGCATAACAACAAGAACAATCTCGCCAAGAAAGACAGTAATGGCGCTGCCATTAATGGTGTTGTTCCTGGTAGCAGAAGCATTATCATGGAGGAAGATCCTAATAATAATAATAATAACAATAACAATGGTGATGATGTTGTTGGTGTTGGTGTTGGTGTTAATGGTGGTGGTGCTAATGGTTCTTCTTCTTCATCTTGA 1008 0.5179 MDIAAQTTTINNNNNSTTPTKSSPPTEEHETETPTRIIQNTTSATITTIPNTTTPTKALTFSNGVLKRHHPHPISAANHLVLYKECLKNHAAALGGHALDGCGEFMPAPTATAGDPTSIKCAACGCHRNFHRREPEDPLISSAFEFHSQNRHHPPPPPPPPPHRSPNSASPPPISSAYYHHPSAAPHMLLALSGVGIAAAPESTATPISAAAALASPRKRFRTKFSQEQKEKMQKFAERVGWKMQKRDDDLVQEFCSEVGVDRGVLKVWMHNNKNNLAKKDSNGAAINGVVPGSRSIIMEEDPNNNNNNNNNGDDVVGVGVGVNGGGANGSSSSS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30507g00001 335 NCBIfam homeobox domain, ZF-HD class 218 275 IPR006455 -
Stsc30507g00001 335 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 276 - -
Stsc30507g00001 335 SUPERFAMILY Homeodomain-like 210 279 IPR009057 -
Stsc30507g00001 335 FunFam Zinc-finger homeodomain protein 2 206 279 - -
Stsc30507g00001 335 Gene3D - 206 280 - -
Stsc30507g00001 335 MobiDBLite consensus disorder prediction 1 24 - -
Stsc30507g00001 335 ProSiteProfiles 'Homeobox' domain profile. 216 280 IPR001356 GO:0003677
Stsc30507g00001 335 MobiDBLite consensus disorder prediction 151 169 - -
Stsc30507g00001 335 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 83 134 IPR006456 -
Stsc30507g00001 335 MobiDBLite consensus disorder prediction 1 38 - -
Stsc30507g00001 335 Pfam ZF-HD protein dimerisation region 81 135 IPR006456 -
Stsc30507g00001 335 MobiDBLite consensus disorder prediction 300 335 - -
Stsc30507g00001 335 MobiDBLite consensus disorder prediction 300 315 - -
Stsc30507g00001 335 MobiDBLite consensus disorder prediction 147 178 - -
Stsc30507g00001 335 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 83 134 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30507g00001 Stsc-Chr30507 7863 9347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30507g00001 1 274 ZF-HD Transcription Factor Family AT5G15210 50.890 1.33e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc30507g00001 ZF-HD_dimer 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30507g00001 - - adu:107486720 389.423