Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30506g00004 ATGGCATCTGTTGGTGTTGCACCAACATCAGGTTTGAGAGAACCCAGTGGCCATGCCGCAGCTGGTGTTGATAGGTTACCAGAGGAAATGAATGATATGAAGATTAGGGACGATAGAGAAATGGAAGCAACAGTTGTTAATGGGAATGGAACAGAGACGGGGCATATCATTGTGACTACCATTGGTGGTAGAAATGGTCAACCAAAGCAGACTATAAGCTATATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGGCTAAATGCTTGGAGACAGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACCATCCAAATGTTGTCTCTTTGAAGCATTGTTTCTTTTCAACCACTGAAAAAGATGAACTATACCTCAATTTGGTTCTTGAGTATGTTCCTGAAACAGTTAATCGTGTTATCAAACATTACAACAAGTTGAACCAAAGGATGCCACTGATATATGTGAAGTTATACACATACCAGATCTTTAGGGCATTGTCTTATATTCATCGTTGTATTGGAGTTTGCCATCGGGATATCAAGCCTCAAAATCTATTGGTCAACCCACATACCCATCAAGTTAAACTCTGTGACTTTGGAAGTGCGAAAGTATTGGTGAAAGGCGAACCAAATATATCTTATATATGCTCCAGATATTATAGAGCGCCTGAGCTTATCTTTGGAGCTACTGAATATACTACAGCTATTGATGTCTGGTCCGTTGGTTGTGTTTTAGCTGAGTTATTGCTTGGACAGCCTTTATTCCCTGGTGAGAGTGGTGTTGATCAGCTTGTGGAGATCATCAAGGTTCTCGGAACTCCAACAAGGGAGGAAATTAAATGCATGAACCCTAACTATACAGAATTTAAATTCCCACAGATTAAGGCACATCCATGGCACAAGATCTTCCATAAGCGCATGCCCCCAGAAGCTGTTGATTTGGTGTCAAGACTACTACAGTACTCCCCTAACCTGCGGTGCACAGCTTTAGATGCCTTGACCCATCCTTTCTTTGATGAGCTTCGTGACCCAAACACTCGCTTGCCAAATGGCCGCTTCCTTCCACCTCTATTTAATTTCAAATCTCATGAACTGAAGGGAGTCCTGGTCGAAACCTTGGTGAAATTAGTTCCAGAGCACGCAAGGAAGCAGTGCCCGTTTCTTGGGTTGTGA 1233 0.4307 MASVGVAPTSGLREPSGHAAAGVDRLPEEMNDMKIRDDREMEATVVNGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVNRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALTHPFFDELRDPNTRLPNGRFLPPLFNFKSHELKGVLVETLVKLVPEHARKQCPFLGL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30506g00004 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Stsc30506g00004 410 SUPERFAMILY Protein kinase-like (PK-like) 73 383 IPR011009 -
Stsc30506g00004 410 Coils Coil 410 410 - -
Stsc30506g00004 410 Gene3D Phosphorylase Kinase; domain 1 58 153 - -
Stsc30506g00004 410 Pfam Protein kinase domain 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30506g00004 410 ProSitePatterns Protein kinases ATP-binding region signature. 80 104 IPR017441 GO:0005524
Stsc30506g00004 410 FunFam Shaggy-related protein kinase kappa 154 402 - -
Stsc30506g00004 410 SMART serkin_6 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30506g00004 410 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 38 404 - -
Stsc30506g00004 410 MobiDBLite consensus disorder prediction 1 29 - -
Stsc30506g00004 410 FunFam Glycogen synthase kinase-3 beta 58 153 - -
Stsc30506g00004 410 CDD STKc_GSK3 69 361 IPR039192 -
Stsc30506g00004 410 ProSiteProfiles Protein kinase domain profile. 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30506g00004 410 Gene3D Transferase(Phosphotransferase) domain 1 154 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30506g00004 Stsc-Chr30506 16873 21359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30506g00004 80 394 MAP Kinase Gene Family AT2G43790 34.557 2.01e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Stsc30506g00004 Pkinase 4.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30506g00004 K27413 - gmx:100780226 824.698