Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30506g00003 ATGCCGGCAAGAAAATTCTACTGTGATTACTGCGACAAGCAGTTTCCGGACTCGCCGGCCGACCGGAAGCGGCATGAGCGAGGCGTTCAGCATCAACAGGCTAAAGCTCGCTGGTATGATTCATTCAAACTTGAACAGCAACACTTTCCTTCTAATGCACCACTACACCAAGGAATGCCTCCGCAACCTCTTTGCTATAACTTTGTCAACACTGGATTTTGTCCTTATGGTAACTCATGCAAATATCTTCATCCCAATGCCAACAATGCACCACAGCCATCAATCATAAGTGCGCATACTTCGTCGGGAAATGTAGTACAAGATAGGACGGGGTTGTCATGGGATAATTTGCCTCCATCACTGCATCCCCCACCAGAAGCTGGATATCCCCATCTTCCTTTTGTGGACTGGGGATAA 417 0.4772 MPARKFYCDYCDKQFPDSPADRKRHERGVQHQQAKARWYDSFKLEQQHFPSNAPLHQGMPPQPLCYNFVNTGFCPYGNSCKYLHPNANNAPQPSIISAHTSSGNVVQDRTGLSWDNLPPSLHPPPEAGYPHLPFVDWG 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30506g00003 138 SMART ZnF_U1_5 3 38 IPR003604 GO:0003676|GO:0008270
Stsc30506g00003 138 PANTHER NUCLEASE-RELATED 1 138 - -
Stsc30506g00003 138 Gene3D - 50 90 - -
Stsc30506g00003 138 Pfam U1 zinc finger 5 39 IPR013085 GO:0008270
Stsc30506g00003 138 SUPERFAMILY CCCH zinc finger 62 86 IPR036855 GO:0046872
Stsc30506g00003 138 SUPERFAMILY beta-beta-alpha zinc fingers 4 50 IPR036236 -
Stsc30506g00003 138 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 62 85 IPR000571 GO:0046872
Stsc30506g00003 138 SMART c3hfinal6 60 86 IPR000571 GO:0046872
Stsc30506g00003 138 ProSiteProfiles Zinc finger C3H1-type profile. 59 87 IPR000571 GO:0046872
Stsc30506g00003 138 Gene3D Classic Zinc Finger 3 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30506g00003 Stsc-Chr30506 11050 13304 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc30506g00003 zf-U1 1.6e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30506g00003 K13152 - gmx:100527203 173.326