Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30504g00003 ATGAATGTTCTTAAGGTTTGTTGGATTAGCCAAAGCTCTGCTAATCAACGGGCTGGCCGTGCTGGGAGGACTGAACCTGGTCGGTGCTATAGATTGTACTCTGAAGCTGATTATCAGTGCATGGAACAAAATCAAGAACCTGAGATTAGAAGAGTACATCTTGGTGTTGCAGTTTTGAGGATCCTTGCTTTAGGGGTGAAGAATGTGCAGGAGTTCGATTTTGTTGATGCTCCAAGTCATAGCTCCATTGAGATGGCCATCCGGAATCTAATCCTCTTGGGAGTCATTCAAATTAACAATAATGTTGTTGAATTAACTAATGAAGGCAGGTACTTGGTAAGAATGGGGATGGAACCTAGGCTTGGTAAACTTATTCTTGGCTGTTTTCATCATACGCTGGGTAGAGAAGGTGTTGTCCTTGCTGCCTTGATGGCTAATGCTAGCAGCATATTCTGCAGAGTTGGTAGTGAAGAAGATAAGCAAAGATCCGATTGTCTTAAAATGCGATTTTGCCATTGTGATGGCGACCTCTTTACCCTTCTTGCTGTGTACAAGGAATGGGAGGGTTTGCCTAAGGAGAGGAGGAACCAGTGGTGTTGGGAAAATAGTATCAATGCCAAATCTATGAGAAGATGCCACGACACAATTTTGGAGCTAGAATCCTGTCTTGAGCGTGAACTTAACCTTGTTACTCCCAGTTACTGGCGTTGGAAACCCCATATGCCCTCTGAATGTGATATGTATCTGAAAAGGGTTATACTGTCCTCCCTTCCTGAGAATGTGGCCATGTACTCTGGATCCAAGCAACTTGGTTATGAAGTGGCACAAACTGGGAAACATGTTCAGCTTCATCCGTCCTGTTCATTGCTTGTATTTGCGCAGAAACCCAGTTGGGTGGTTTTCAGTGAGCTTCTTTCAATTTCTAATCAATATTTGGTCTGTGTAAGTGCGTTCGATTTTGAATCATTGCACAGCCTTGACCCTCCTCCCTTGTTTGATGTGTTCAAGATGGAAAAGCGGAAATTGGAAACCAGGATGTTGTCTGGTTTTGGCTGTACTCTTCTCAAGAAATTTTGTGGAAAAGCTAACAGTAATTTGATTAGTCTTGTATCACATATACGGAAAGTTTGTGAGGATGACCGAATCTCCATTGAAGTTGATGTTGAACGCAATGACATTCAGTTATATGCCACATCACATGATATGGAAACAGTTGTTCAATATGTAAATGATGTTTTAGAATGCGAGAAAAAGTGGCTGCGTACTGAGTGTATTGAAAAATGTTTGTATCATGGGTCTGGTTTCTCACCTTCTATAGCTTTGTTTGGCTCTGGTGCAGAGATTAAGCATTTAGAACTTGGGAAGCATTCCTTGAGTGTTGAAGTTTGTCACCCAAACACTGATGCAATTGACGACAAACAGCTCCTGATGTTTTTGGAGAAGAATACCTCAGGAATTGTCTGCTCTGTTCACAAGTACACATGCACTGCAAGGGATGTTGAGGATAGAGGAAAGTGGGGTAGGATTACATTTCTCTCCCCGGATGCTGCTTTAAGAGCTGCTGAGCTAGATGGTGAAGAGTTTTGTGGTGCTCCCTTGAAAATTTCTCCTTCACAAGCAGCTGCTGGAGATAAATCATTTTTGTTTCCAGCTGTCAAAGCAAAAATCTTTTGGCCTCGTAGGCTTAGCAGGGGGGTTGCGATAGTTAAATGTGACATAAAAGATGTTGATATCATGTTGAGAGATTTCTATAACCTTCCTATAGGAGGAAGGTATGTACGGTGTGAACCTGGCAGAAAGGATGTGGATAGTGTGGTGATAAGTGGGTTTGACAAGGAGCTCTCGGAAGCAGAAATTCTAGATGTAGTAAGAACTGCTACAAGTGTAAGGATTTCAAGCTTTTTCTTGATTAAAGGAGATGCTGTTGGGAATCCACCTGTCCGTTCATGTGAAGAGGCGCTTTTGAAAGAAATTTCCCCCTTCATGCCCAAGAAAGATCCCCACATCAATTCTTGTCGGGTTCAAGTCTTCCAACCTGAGCCCAAGGATGCCTACATGAGAGCTTCAATCACCTTTGATGGAAGACTACATTTAGAGGCAGCCAAAGCTTTAGAGCAAATTGAGGGGAAGGTATTGCCAGGATGCCTGTCATGGCAGAAGATAAATTGTCAGCGTGTTTTCCATAGCTCCTTGATAGTTCCTCTGCCAGTGTATCGTGTTATTAAGGAAGAATTGGAGAAAATACTTGAAAGCTTCAGTAATTTCAAAGGTCTTGAATGTAGACTTGAAAGGACTTCCAATGGTTCCCAGAGATTGAAAATTACTGCAAATGCCACAAAGACAGTAGCAGAAGTTCGGAGGCCGTTTGAAGAATTATCAAGGGGGAAAAGCGTTGAGCATGCCAGCCTCACCCCTGCAGTTGTGCAACTCCTGGTGTCAAGAGAGGGCTTTAATCTCAAAAGCTCATTGCAGCAGGAGACAGGAACTTACATTCTTTTTGACAGGTACAACATGAGTGTACGTGTGTTTGGTCCCCCTGACAAGATTCCCTTTACTCAGCAGAAACTGGTTCAATCCCTACTCTCTTTGCATGAGGCAAAGCATTTGGAAATCCATTTGAGGGGCCGGAATCTACCTGCTGACTTAATGAAGCAAGTGGTAAAACAATTTGGGCCAGATCTTAGTGGACTGAAAGAGAAGGTACCTGGGGCAGATCTTGTACTAAACATACGCCGCCAGATAATCTATCTTCGTGGCAACAAGGAGTTGAAACAAAAGGTAGAGAAGTTCATTTTTGATATTGCTCGCTCTAGTCGTGGTGCTGTTGAGAGATTGAGCACTGGACCTAGTTGCCCAATTTGCTTATGTGAGGTTGAGGATGGATATCAGCTTGAAGGTTGTTGTCATTTATTCTGCCGTTCATGCCTGGTGGATCAATGTGAATCTGCTATAAGAAACCAAGGTACTTTCCCAATATGTTGTGCCCACGAGGGTTGTGGAGAAGCCATTCTGCTCACAGATTTGAGGGGTCTCTTACTGGGTGACAAGTTGGAGGAACTTTTCAGGGCTTCTTTGGGATCTTTTGTGGCCTCTAGTGGGGGAACATACCGATTTTGTCCATCTCCTGACTGCCCCTCGGTTTATCGAGTTGCAGACCCGGGGACAGCAGGCGAGCCATTTGTATGCGGGGCATGTTATTCAGAAACTTGTACCAGGTGCCACTTGGAGTATCATCCATACATTTCGTGCGATCAGTATCGGGAATTCAAGGAAGACCCCGACTCATCGCTGAAGGCATGGTGCAGTGGTAAAGAACATGTTAAGGCGTGTCCATCTTGTGGGTATACAATTGAGAAGATAGATGGTTGCAACCATATTGAGTGCAAGTGTGGGAAGCATGTGTGCTGGGTTTGCTTGGAGTTCTTTGGGAGTAGTGATAGTTGCTATGACCATTTGAGAAATATACACATGGCTATCATTTGA 3483 0.4364 MNVLKVCWISQSSANQRAGRAGRTEPGRCYRLYSEADYQCMEQNQEPEIRRVHLGVAVLRILALGVKNVQEFDFVDAPSHSSIEMAIRNLILLGVIQINNNVVELTNEGRYLVRMGMEPRLGKLILGCFHHTLGREGVVLAALMANASSIFCRVGSEEDKQRSDCLKMRFCHCDGDLFTLLAVYKEWEGLPKERRNQWCWENSINAKSMRRCHDTILELESCLERELNLVTPSYWRWKPHMPSECDMYLKRVILSSLPENVAMYSGSKQLGYEVAQTGKHVQLHPSCSLLVFAQKPSWVVFSELLSISNQYLVCVSAFDFESLHSLDPPPLFDVFKMEKRKLETRMLSGFGCTLLKKFCGKANSNLISLVSHIRKVCEDDRISIEVDVERNDIQLYATSHDMETVVQYVNDVLECEKKWLRTECIEKCLYHGSGFSPSIALFGSGAEIKHLELGKHSLSVEVCHPNTDAIDDKQLLMFLEKNTSGIVCSVHKYTCTARDVEDRGKWGRITFLSPDAALRAAELDGEEFCGAPLKISPSQAAAGDKSFLFPAVKAKIFWPRRLSRGVAIVKCDIKDVDIMLRDFYNLPIGGRYVRCEPGRKDVDSVVISGFDKELSEAEILDVVRTATSVRISSFFLIKGDAVGNPPVRSCEEALLKEISPFMPKKDPHINSCRVQVFQPEPKDAYMRASITFDGRLHLEAAKALEQIEGKVLPGCLSWQKINCQRVFHSSLIVPLPVYRVIKEELEKILESFSNFKGLECRLERTSNGSQRLKITANATKTVAEVRRPFEELSRGKSVEHASLTPAVVQLLVSREGFNLKSSLQQETGTYILFDRYNMSVRVFGPPDKIPFTQQKLVQSLLSLHEAKHLEIHLRGRNLPADLMKQVVKQFGPDLSGLKEKVPGADLVLNIRRQIIYLRGNKELKQKVEKFIFDIARSSRGAVERLSTGPSCPICLCEVEDGYQLEGCCHLFCRSCLVDQCESAIRNQGTFPICCAHEGCGEAILLTDLRGLLLGDKLEELFRASLGSFVASSGGTYRFCPSPDCPSVYRVADPGTAGEPFVCGACYSETCTRCHLEYHPYISCDQYREFKEDPDSSLKAWCSGKEHVKACPSCGYTIEKIDGCNHIECKCGKHVCWVCLEFFGSSDSCYDHLRNIHMAII 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30504g00003 1160 ProSitePatterns Zinc finger RING-type signature. 967 976 IPR017907 -
Stsc30504g00003 1160 SMART ha2_5 85 181 IPR007502 GO:0004386
Stsc30504g00003 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 236 IPR027417 -
Stsc30504g00003 1160 CDD BRcat_RBR 1035 1086 - -
Stsc30504g00003 1160 ProSitePatterns Zinc finger C2H2 type domain signature. 1135 1156 IPR013087 -
Stsc30504g00003 1160 CDD Rcat_RBR_DEAH12-like 1107 1156 - -
Stsc30504g00003 1160 ProSiteProfiles Zinc finger RING-type profile. 951 993 IPR001841 -
Stsc30504g00003 1160 SUPERFAMILY RING/U-box 950 1012 - -
Stsc30504g00003 1160 SMART ibrneu5 1018 1083 IPR002867 GO:0008270
Stsc30504g00003 1160 SMART ibrneu5 1084 1148 IPR002867 GO:0008270
Stsc30504g00003 1160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 946 1026 IPR013083 -
Stsc30504g00003 1160 Gene3D - 1 45 IPR027417 -
Stsc30504g00003 1160 SUPERFAMILY RING/U-box 1105 1152 - -
Stsc30504g00003 1160 Gene3D - 1079 1158 - -
Stsc30504g00003 1160 PANTHER ATP-DEPENDENT RNA HELICASE 1 332 - -
Stsc30504g00003 1160 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 47 90 - -
Stsc30504g00003 1160 Pfam Helicase associated domain (HA2) 86 180 IPR007502 GO:0004386
Stsc30504g00003 1160 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 249 324 IPR011709 -
Stsc30504g00003 1160 Gene3D - 47 90 IPR042035 -
Stsc30504g00003 1160 Pfam IBR domain, a half RING-finger domain 1026 1083 IPR002867 GO:0008270
Stsc30504g00003 1160 ProSiteProfiles TRIAD supradomain profile. 947 1160 IPR044066 -
Stsc30504g00003 1160 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1079 1157 - -
Stsc30504g00003 1160 SUPERFAMILY RING/U-box 1034 1088 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30504g00003 Stsc-Chr30504 21476 26165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30504g00003 966 1142 C3H Transcription Factor Family AT2G31770 29.508 4.36e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30504g00003 K12818 - gmx:100810008 1844.71