Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30503g00006 ATGGCGGGAGCTACAGCAAGAACCCTCTTCTTCACCCTCTCTCTCTCTTCCTCTTCCTTCACGCGCCTCTCTCGTCGCTCCAATCTCATTCCACTCCTCACGCGCTCTAAGCCCATCATCAATGTTCCGCCGCCACGCTTCAGGACATTCTGTTCCGTCGCCGCCGCACCGGAAACTTCGGAAACCGATCACCAGACGAAGCACGCCGTCCTCCTTGAGAAGCTAAGACTGAGGCATCTCAAGGATAGTGTAAAGAGCTCAGAATCCAAGAATAAGGACCAAACAAAGAAGAAGAATTTTGATGGTGAAAGTGAGAATTTTGATGGGGTGGTGGTGAAAAAGAATAAGCTTGTTGGGAGTTTTGAGGAACTGGGTTTGAGTGAAGAGGTTATGGGTTCTGTTAGGGAAATGGGTATTGAAGTTCCCACTGAAATTCAGTGTATTGGTATTCCTGCTGTCTTGCAAGAGAACAGTGTTGTGTTGGGTTCTCACACTGGCTCTGGCAAAACCCTTGCTTACTTGCTTCCCCTTGTTCAGTTGCTAAGGCGGGATGAACAGTTGAATGGAATACAGTTAAAGCCCAGGCGACCTCGTGCTGTTGTACTATGCCCTACAAGGGAGTTGTGTGAACAGGTTTTTCGAGTTGCGAAATCAATTAGTCATCATGCACGGTTCAGGTGTACAATGGTAAGTGGTGGTGGCCGTATTAGACCTCAAGAGGATTCACTTAATAACCCCATTGATGTGGTAGTTGGTACCCCTGGAAGGATTCTTCAACATATTGAGGAGGGCAACATGGTATATGGTGAAATCAAATACTTGGTATTGGATGAGGCAGATACAATGTTTGATCGTGGCTTTGGTCCTGATATACGCAAATTTCTGGCCCCATTGAAACATCGTGCATCGAAGCCTGATGGCCTAGGTTTTCAGACTGTCTTGGTAACTGCAACAATGACAAAGGCTGTGCAAAAGCTGGTTGATGAGGAATTTCAGGGCATTGTACATCTGAGAACATCAACATTGCATAAAAAGATTTCTTCCGCTCGTCATGATTTTATTAAACTTTCGGGTTCTGAGAACAAGCTGGAAGCATTACTTCAGGTACTTGTTCCAAGCCGGGCAAAAGGCAACAAGGTGATGGTTTTCTGCAATACTTTGGACTCTAGCCGTGCGGTGGATCACTATCTCGTTGAAAATATGATTCCTACTGTCAACTACCATGGGGAGGTACCAGCAGAGCAAAGGGTTGAAAACCTCAATAAGTTTAAGAATGACAGTGATGATCGTCCAACATTAGTTTGCTCAGACCTGGCCGCTAGGGGTCTGGACTTGGATGTAGACCATGTTGTCATGTTTGACTTCCCCAAGAACGCTATTGACTACCTTCATCGCACTGGAAGAACTGCTCGTATGGGTGCAAAAGGGAAAGTAACCAGTTTGGTTACGAAAAAGGACTTGATCTTGTCCACTAGGATAGAGGAAGCAATGAGGAAGAATGAGAGTTTGGAGGCTATCACCAAAGAAGGAGTTCAGAGGGATATCGCCAGGACCCAAGTTAATGGGCAGAGTGGGAAGGATAGAAAGTTTGTCAAAGTTTCTAAAGTTAAGAACAATCATGCTGGACATGCCAGTTCAGGGATTAAAGGATCGGATTTGAAATCAGGAAAAGGATCATCTTCAGGTAAATCTATGAAGAAAGGGATTAAGGTTTCAAATTCTGTAAAATCTTCCGGTGCAAATAGCTCGAGAAAAGCTTCTTCGGGGAATAAGCAACAAACAAGTAAAAGGACCAGTGCCACTAAAACAACGAATTCTAAACTCAGTGTTGTCGGGTTTAGAGGTCGAAACTCATCATCAAATCCCTTGTGA 1872 0.4487 MAGATARTLFFTLSLSSSSFTRLSRRSNLIPLLTRSKPIINVPPPRFRTFCSVAAAPETSETDHQTKHAVLLEKLRLRHLKDSVKSSESKNKDQTKKKNFDGESENFDGVVVKKNKLVGSFEELGLSEEVMGSVREMGIEVPTEIQCIGIPAVLQENSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGIQLKPRRPRAVVLCPTRELCEQVFRVAKSISHHARFRCTMVSGGGRIRPQEDSLNNPIDVVVGTPGRILQHIEEGNMVYGEIKYLVLDEADTMFDRGFGPDIRKFLAPLKHRASKPDGLGFQTVLVTATMTKAVQKLVDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKLEALLQVLVPSRAKGNKVMVFCNTLDSSRAVDHYLVENMIPTVNYHGEVPAEQRVENLNKFKNDSDDRPTLVCSDLAARGLDLDVDHVVMFDFPKNAIDYLHRTGRTARMGAKGKVTSLVTKKDLILSTRIEEAMRKNESLEAITKEGVQRDIARTQVNGQSGKDRKFVKVSKVKNNHAGHASSGIKGSDLKSGKGSSSGKSMKKGIKVSNSVKSSGANSSRKASSGNKQQTSKRTSATKTTNSKLSVVGFRGRNSSSNPL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30503g00006 623 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 119 147 IPR014014 GO:0003724
Stsc30503g00006 623 CDD DEADc 130 329 - -
Stsc30503g00006 623 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 60 508 - -
Stsc30503g00006 623 SMART ultradead3 138 357 IPR014001 -
Stsc30503g00006 623 Pfam DEAD/DEAH box helicase 143 326 IPR011545 GO:0003676|GO:0005524
Stsc30503g00006 623 Pfam Helicase conserved C-terminal domain 362 473 IPR001650 -
Stsc30503g00006 623 Gene3D - 78 338 IPR027417 -
Stsc30503g00006 623 MobiDBLite consensus disorder prediction 82 101 - -
Stsc30503g00006 623 MobiDBLite consensus disorder prediction 552 623 - -
Stsc30503g00006 623 SMART helicmild6 391 473 IPR001650 -
Stsc30503g00006 623 Gene3D - 343 595 IPR027417 -
Stsc30503g00006 623 CDD SF2_C_DEAD 350 482 - -
Stsc30503g00006 623 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 515 IPR001650 -
Stsc30503g00006 623 MobiDBLite consensus disorder prediction 516 623 - -
Stsc30503g00006 623 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 337 IPR014001 -
Stsc30503g00006 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 490 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30503g00006 Stsc-Chr30503 17510 22515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30503g00006 118 495 Eukaryotic Initiation Factors Gene Family AT3G19760 29.243 1.72e-42 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30503g00006 - - gmx:100805709 832.787