Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30503g00005 ATGAGAAGAAAAGGGCGAGAGATTCTTAACCTATGTATCTCTCTACACTCCCCATTGAAGCCTGAACCATTAGCATCTTCTTTTCATGGTTCTTCTAGAACCTTCTCATCATTTTCCGCTTCTTTTTCTTCTTCTTCTTCCTCTTCCCCTTGTGTTGAAGATGAAAAGGCTTCGGCACCGTCCAAGACGCAGAGGGAATCAATGATTTTGGAACAGTTCAGACAAAGGAAGCTCAAAGGTTGTTCATCAAGTTCTTCTCGTGATGCTGATGCTGAGAAGAAAGAGGGTGAGTCCACTATGGTGGTTTCCAGCTTTAGGGAGCTCGGTGTGGCTGAGGAGCTTGCTGAGGTTTTGGAAAAGATCGGTGATGGTGTTCCGAATGAGATACAGTGTGTAGTTATTCCAGCTGTTTTGGAAGGGAAGAGCTTGTTGTTGAGTTCACCACCTGAAAATGACAGAACTTTGGCTTTCTTGTTGCCCCTTATTCAGATGCTGCTACGTGGTAAGGTTGGTTCGAATTCAAAGCATCCGAGAGCCATTGTGATTTGTGCTACGGAGGAGAAAGCCGCTGAGTGCTTTAGTGCTGCAAAATACATATTGGAGATTGCAGAAGCGAAGTTGGCAAAGAGTTCTTCCCCGGATAATGAGCACTCAGATGTCTCAATTGGTCTTCTAATCGGAACTCCTTCGGAGATTATTGACTACATTGAAGAGGGAAGTGTTGTTCCTGCTGAAATAAGATATATGGTTTTGGATGATGTAGATTCCATGCTTGGTAGTGGCCTTGGTTCTAAAATCCACGAGATTCTCAAACCGTTTCAAGATCACGAAAGATTGCAAACCGTACTAGTTACATCACCAATCACTGAGGTATTGGGTGATGAATCCCCCATTGTGAAGCACCTTGAGCGTGATCATGCTGGAAATATTTCTGCTATGTCTTTGGAAATGGATCAAAGAGAAGTGTTCCAATATACAGAGTCCCTGGATGCTCTTAGGAAAAAAGTGGCAGAGGCCATGGACACCCTTGTGTAA 1035 0.4386 MRRKGREILNLCISLHSPLKPEPLASSFHGSSRTFSSFSASFSSSSSSSPCVEDEKASAPSKTQRESMILEQFRQRKLKGCSSSSSRDADAEKKEGESTMVVSSFRELGVAEELAEVLEKIGDGVPNEIQCVVIPAVLEGKSLLLSSPPENDRTLAFLLPLIQMLLRGKVGSNSKHPRAIVICATEEKAAECFSAAKYILEIAEAKLAKSSSPDNEHSDVSIGLLIGTPSEIIDYIEEGSVVPAEIRYMVLDDVDSMLGSGLGSKIHEILKPFQDHERLQTVLVTSPITEVLGDESPIVKHLERDHAGNISAMSLEMDQREVFQYTESLDALRKKVAEAMDTLV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30503g00005 344 Pfam Poly-adenylate binding protein, unique domain 297 343 IPR002004 GO:0003723
Stsc30503g00005 344 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 238 344 IPR002004 GO:0003723
Stsc30503g00005 344 Gene3D - 49 293 IPR027417 -
Stsc30503g00005 344 MobiDBLite consensus disorder prediction 27 54 - -
Stsc30503g00005 344 MobiDBLite consensus disorder prediction 18 98 - -
Stsc30503g00005 344 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 57 290 - -
Stsc30503g00005 344 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 134 306 IPR014001 -
Stsc30503g00005 344 SUPERFAMILY PABC (PABP) domain 291 343 IPR036053 GO:0003723
Stsc30503g00005 344 SMART poly_2 286 344 IPR002004 GO:0003723
Stsc30503g00005 344 Gene3D - 294 344 - -
Stsc30503g00005 344 SMART ultradead3 122 305 IPR014001 -
Stsc30503g00005 344 Pfam DEAD/DEAH box helicase 128 284 IPR011545 GO:0003676|GO:0005524
Stsc30503g00005 344 MobiDBLite consensus disorder prediction 81 98 - -
Stsc30503g00005 344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 290 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30503g00005 Stsc-Chr30503 11765 13645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30503g00005 102 271 Eukaryotic Initiation Factors Gene Family AT3G19760 20.571 1.91e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30503g00005 - - gmx:100800575 386.341