Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30501g00004 ATGGCTTCTTCTCTCAATGTTCTTCTTTGTCTTTTCTTCTCTCTCTTGGCAACTTCATCTTTTGCTTTTCATGTTTCAATCAAAACAACATACATAGACCCGCTAAGTTGCTCTGTAGAGACTGCTAATACATGCACTGCATCACTGTACCACATAACTCGTGATGATTACAGCCTTGAACAAATTGCATTTGATTACTCTGTTAACACCTCACAAATCAAGCCTATAACTTATGAAACAAGGCAAGATTACCTCATAACAGTTCCTTGTTCTTGCAAGAACACACAAAACCTCAGCGGGTATTTCTACCATACAACCTACAAAAATGTGAAGCAAGGTGACATCTTTGTCAACATATCAACCACTGTTTACAGTGGACAGGCCATGCCCATCACCCGAGTGATAATTCCAGGCGAACCTCTGCCAATAGACATTCCATGTGGGTGTTCTGAGGATGAGGCTCAAAGAGTTGTCACATATACAGTGCAGCAGAATGATACCCCAGAAAAAATTACTCTTCTGCTTAATGCTACACTGCCTGCCCTGCTCAGAATGAACAAGATTCTAGCTGAGAAACCTGGTTTCATTGATGTTGGTTGGGTGCTCTTTGTTCCTTTGGAATTGAATGGGGTACCTCCACAACCCACAGAAAAAATGAAAAAGAATTGGCCAATGAAAGTTGGTATCATCGTGGGAATCCTGTTACTTTCAATTATCATCATCACCATTCTCATAATTCTTTGGAGAAGGAGAGTCCATCAAATGATCAGAGATGATTCCCCGGTTGTCTCTAGAAGATCATTTATCAACAGAAATGTTACCTTGCACAACTCCACCCTTTACAAAGAATATATGGGAGATGTAATGCAAATTGAGTCAGAAAGGCCGGTGATATATGGTCTTGAGGAGATTGAAGAGGCTACAAATAACTTTGATGAATCTCGAAGAATCGGAGTTGGTGGATATGGGAGTGTCTATTTTGGAATCTTAGAGCAGAAGGAGGTTGCAGTAAAGAAGATGAGGTCTAATAAGTCTAAAGAGTTCTATGCAGAACTGAAGGTCTTGTGTAAGATCCATCATATCAACATTGTGGAGCTATTAGGATATGCCAGCGGAGAAGATCACCTCTATTTGGTGTATGAGTATGTTTCAAATGGATCTCTCAGTGAACATATTCATGATCCATTAGAGAAAGGGCACCAGCCTCTTTCTTGGAATGCAAGGGTTCAGATTGCACTGGATGCAGCAAGAGGCCTTGAATACATACATGATCATACAAAAGCTCGATATGTGCATCGCGACATAAAGACTAGCAATATTCTTGTTGATGAGAAGCTCAGAGCTAAGGTAGCAGATTTTGGACTTGCAATGCTGGTGGACAGAACCAATGATGAAAATTTCATAGCAACAAGGCTTGTTGGAACACCAGGATACCTTCCACCTGAATCTGTGAAGGAGCTTCAGGTGACACCAAAAACCGATGTGTTTGCATTTGGAGTGGTTCTAGCAGAACTCATAACAGGGAAACGTGCACTGTTTCGGGAGAACAACGAAGAAGGCAGCAAAATGAAGTCACTTATTTCACTTATACATCAAATATTCCAAGATGATGACCAAGAGATAGCTTTAGAAGATGTGATAGATAAGAACCTTGAAGCTAACTACCCCATTGAATACGTCTTCAAGGTAGCAGAGATAGCAGGGTGGTGCTTGCAAGAAAATCCAGTGGAAAGGCCTGAAATGAGGGACATAGTTGGAGCATTGTCACAGATAGTGATGTCCTCCATAGAATGGGAAGCATCACTTGGTGGAAACAGCCAAGTCTTCAGTGGTGTCTTTACTGGAAGATGA 1851 0.4122 MASSLNVLLCLFFSLLATSSFAFHVSIKTTYIDPLSCSVETANTCTASLYHITRDDYSLEQIAFDYSVNTSQIKPITYETRQDYLITVPCSCKNTQNLSGYFYHTTYKNVKQGDIFVNISTTVYSGQAMPITRVIIPGEPLPIDIPCGCSEDEAQRVVTYTVQQNDTPEKITLLLNATLPALLRMNKILAEKPGFIDVGWVLFVPLELNGVPPQPTEKMKKNWPMKVGIIVGILLLSIIIITILIILWRRRVHQMIRDDSPVVSRRSFINRNVTLHNSTLYKEYMGDVMQIESERPVIYGLEEIEEATNNFDESRRIGVGGYGSVYFGILEQKEVAVKKMRSNKSKEFYAELKVLCKIHHINIVELLGYASGEDHLYLVYEYVSNGSLSEHIHDPLEKGHQPLSWNARVQIALDAARGLEYIHDHTKARYVHRDIKTSNILVDEKLRAKVADFGLAMLVDRTNDENFIATRLVGTPGYLPPESVKELQVTPKTDVFAFGVVLAELITGKRALFRENNEEGSKMKSLISLIHQIFQDDDQEIALEDVIDKNLEANYPIEYVFKVAEIAGWCLQENPVERPEMRDIVGALSQIVMSSIEWEASLGGNSQVFSGVFTGR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30501g00004 616 FunFam PTI1-like tyrosine-protein kinase 3 383 602 - -
Stsc30501g00004 616 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Stsc30501g00004 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Stsc30501g00004 616 Gene3D Phosphorylase Kinase; domain 1 289 382 - -
Stsc30501g00004 616 Pfam Protein kinase domain 312 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30501g00004 616 Gene3D Transferase(Phosphotransferase) domain 1 383 601 - -
Stsc30501g00004 616 Gene3D LysM domain 151 217 IPR036779 -
Stsc30501g00004 616 SMART serkin_6 311 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30501g00004 616 ProSiteProfiles Protein kinase domain profile. 311 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30501g00004 616 SUPERFAMILY LysM domain 158 205 IPR036779 -
Stsc30501g00004 616 FunFam Kinase family protein 286 382 - -
Stsc30501g00004 616 Pfam LysM domain 160 205 IPR018392 -
Stsc30501g00004 616 CDD LysM 158 204 IPR018392 -
Stsc30501g00004 616 SUPERFAMILY Protein kinase-like (PK-like) 297 592 IPR011009 -
Stsc30501g00004 616 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 26 612 IPR044812 GO:0019199|GO:0045087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30501g00004 Stsc-Chr30501 18551 21424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30501g00004 285 616 Receptor kinase-like Gene Family AT1G51940 51.929 8.74e-117 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc30501g00004 Pkinase 2.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30501g00004 - - gmx:100791718 783.097