Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc304g00002 ATGGTTCGTCAAGCTGATTTAGTGATTCTTGGTGTCTCTGTTGGTTTGGCCCTTGGAATTCTGATATCTTGTGCCATATTTTTTGGCATAAGGTGGTATAAGAAGCGTGCGAATCTTGGACGATCTGCAAACGAGAGTAGTTTAACAACTCTTCCAATTCGAACAAATGGATTGGGAACAAGCACTGACATCAGTGCTTCTATAACTAGTTCCATAGCTCCATCAAGATCTGACAATGTACAGAAAAATTCTCATTTCAGCTGGTGGAGTAATCAAAACAAAGATCCTTTTGCTTCAGCCTCAGGCATTCTAAAGTACTCGTATAGAGAAATTCAAAAGGCAACACAAAATTTCACAACTTCCTTGGGGCAAGGATCATTTGGCACAGTTTATATAGCCACAATGCCTACAGGGGAAGTGGTAGCTGTGAAGGTTCTTGCACCTAATTCAAAACAAGGGGAGAAAGAATTCCAAACAGAGGTGCTTCTGCTTGGAAGACTGCATCATCGAAATCTTGTGAATTTGGTTGGATATTGTGTAGATAAAGGACAGCGCATACTTGTCTATCAGTTCATGAGTAATGGAAGTTTAGCTAATCTTTTATATGGTGAAGAAAAACAATTGAGTTGGGATGACCGGCTGCAAGTCGCACTTGATATTTCACATGGAATAGAGTACCTTCATGAAGGAGCAGTTCCACCTGTCATACATCGCGACTTGAAGTCTGCCAACATATTACTAGATCACTCAATGAGAGCTAAGGTTGCTGACTTCGGACTGTCAAAGGAAGAAATATTTGATGGCCGGAATTCTGGTCTGAAAGGTACTTACGGTTACATGGACCCGGCATACATTTCGACAAGCAAGTTAACAATGAAGAGTGACATCTACAGCTTCGGCATCATAATATTTGAGATCATCACTGCCATCCACCCACATCAAAACTTGATGGAGTACATAAACCTTGCTGCTATGGATCACAATGGCGTAGATGAAATTCTTGACAAGCAACTTGTCGGAAAATGCAACCTTGGAGAAGTGAGGCAGCTTGCTAAGATCGCACACAAATGCTTGCACAAATCACCTAAGAAACGCCCTTCAATAAGCGAGGTTTCACAGGGCATATCGAGGATAAAGCAAAGGCGGCTTCGCCATATGATGGAAGCTTCCATGTCATTTGCTAGCAAAAACTTTTCAAGAGCCGTTAGTGGATTGGAAGATCGACAACTCGAGCTAAGTAGAATAACCACCATTAGTGTAGGGGAAACTGGATGA 1275 0.418 MVRQADLVILGVSVGLALGILISCAIFFGIRWYKKRANLGRSANESSLTTLPIRTNGLGTSTDISASITSSIAPSRSDNVQKNSHFSWWSNQNKDPFASASGILKYSYREIQKATQNFTTSLGQGSFGTVYIATMPTGEVVAVKVLAPNSKQGEKEFQTEVLLLGRLHHRNLVNLVGYCVDKGQRILVYQFMSNGSLANLLYGEEKQLSWDDRLQVALDISHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPAYISTSKLTMKSDIYSFGIIIFEIITAIHPHQNLMEYINLAAMDHNGVDEILDKQLVGKCNLGEVRQLAKIAHKCLHKSPKKRPSISEVSQGISRIKQRRLRHMMEASMSFASKNFSRAVSGLEDRQLELSRITTISVGETG 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc304g00002 424 Pfam Protein tyrosine and serine/threonine kinase 118 373 IPR001245 GO:0004672|GO:0006468
Stsc304g00002 424 SUPERFAMILY Protein kinase-like (PK-like) 85 372 IPR011009 -
Stsc304g00002 424 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Stsc304g00002 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Stsc304g00002 424 Gene3D Transferase(Phosphotransferase) domain 1 192 400 - -
Stsc304g00002 424 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 192 401 - -
Stsc304g00002 424 SMART serkin_6 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc304g00002 424 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 90 191 - -
Stsc304g00002 424 ProSiteProfiles Protein kinase domain profile. 116 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc304g00002 424 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Stsc304g00002 424 Gene3D Phosphorylase Kinase; domain 1 79 191 - -
Stsc304g00002 424 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc304g00002 Stsc-Chr304 31420 35704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc304g00002 86 380 Receptor kinase-like Gene Family AT1G79620 43.226 3.79e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Stsc304g00002 PK_Tyr_Ser-Thr 2.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc304g00002 - - gmx:100819995 724.931