Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30499g00006 ATGAATCCTTGGAGCCCATGTGATGATTTATACTTTCAGATTTCATCATTTTCTGCAGATTATTCATCCATCCCAACAAATATCCAAACATCATCATCAGCCCCGGAAGATCATCATCAGATCCTGGTTCATGAATATGAATATGATCCTGCTATGGTGGATGCAAGTGCCAGTGTACCTCCTTGTCCAAATCAAAAGGAAAAGGGAAAGGGCAAGCAGCGAAAAGGGTTGAATCCTAAGAATGCTTTGGGAGCAGAAGATGGTTATGAGAACAAGAAGTGGATGCATAGAGAGACAGAAAAACAAAGAAGGCAAGAAATGGCAAGACTTTGCACTACCTTTAGAACTCTTCTACCTTTTGAATATATTAAGGGAAAGAGGTCAACTTCTGACCACATGCTTGAGGGAGTGAAATATATCAAACACTTAGAGAATAGGGTGGCACAGTTGGAAGCCAAAAGGGATGAGTTAGTGAAGTTGACTAGGGGAAGTAGTTCTTCAGCTTCTACAAAGCATGTCCATCATCATCATCCAACTTATGTCATTGTTGAACCTTTATCATCAGGGGGAGTTCTGATTAAGTGCAGTTATAGCTTCCGAAACTTTGCATTCCCTTTATCAGGAATTTTGGACACTGTGCTTAAGCAAGGCCTTAATGTAGTTAATTGTACTTCAATCACAACTGATGATCACAGGTTCATACACACTATCCGATCAGAGGGTCCAGAACTGATGACCACTGAGACTGATTACACTGAGCTGCAAAGAAAGCTTAACGAAGCTATATCATCATCAAGTAATTAG 804 0.403 MNPWSPCDDLYFQISSFSADYSSIPTNIQTSSSAPEDHHQILVHEYEYDPAMVDASASVPPCPNQKEKGKGKQRKGLNPKNALGAEDGYENKKWMHRETEKQRRQEMARLCTTFRTLLPFEYIKGKRSTSDHMLEGVKYIKHLENRVAQLEAKRDELVKLTRGSSSSASTKHVHHHHPTYVIVEPLSSGGVLIKCSYSFRNFAFPLSGILDTVLKQGLNVVNCTSITTDDHRFIHTIRSEGPELMTTETDYTELQRKLNEAISSSSN 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30499g00006 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 143 IPR011598 GO:0046983
Stsc30499g00006 267 FunFam Transcription factor bHLH126 84 171 - -
Stsc30499g00006 267 CDD bHLH_AtORG2_like 92 167 - -
Stsc30499g00006 267 MobiDBLite consensus disorder prediction 54 85 - -
Stsc30499g00006 267 Coils Coil 140 160 - -
Stsc30499g00006 267 Gene3D - 86 170 IPR036638 GO:0046983
Stsc30499g00006 267 Pfam Helix-loop-helix DNA-binding domain 93 144 IPR011598 GO:0046983
Stsc30499g00006 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 159 IPR036638 GO:0046983
Stsc30499g00006 267 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 71 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30499g00006 Stsc-Chr30499 34527 35543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30499g00006 87 258 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 37.853 1.40e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30499g00006 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30499g00006 - - adu:107466968 433.335